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require 'rubygems'
require 'opentox-ruby-api-wrapper'
require 'test/unit'
require 'validate-owl.rb'
class FminerTest < Test::Unit::TestCase
def setup
@dataset = OpenTox::Dataset.new "http://localhost/dataset/1"
@feature = "http://localhost/dataset/1/feature/Hamster%20Carcinogenicity"
@bbrc = OpenTox::Algorithm::Generic.new "http://localhost/algorithm/fminer/bbrc"
@last = OpenTox::Algorithm::Generic.new "http://localhost/algorithm/fminer/last"
end
def teardown
end
=begin
=end
def test_bbrc
dataset = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
#dataset = @bbrc.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
d =OpenTox::Dataset.new dataset
d.load_features
assert_equal 41, d.features.size
#validate_owl
end
def test_last
dataset = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
d =OpenTox::Dataset.new dataset
d.load_features
assert_equal 36, d.features.size
#validate_owl
end
def test_regression_bbrc
@dataset = OpenTox::Dataset.new
@dataset.save
@dataset.load_csv(File.open("data/EPAFHM.csv").read)
@dataset.save
@feature = File.join @dataset.uri,"feature/LC50_mmol"
dataset = OpenTox::Algorithm::Fminer::BBRC.new.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
d =OpenTox::Dataset.new dataset
d.load_features
assert_equal 222, d.features.size
end
def test_regression_last
@dataset = OpenTox::Dataset.new
@dataset.save
@dataset.load_csv(File.open("data/EPAFHM.csv").read)
@dataset.save
@feature = File.join @dataset.uri,"feature/LC50_mmol"
dataset = OpenTox::Algorithm::Fminer::LAST.new.run({:dataset_uri => @dataset.uri, :prediction_feature => @feature}).to_s
d =OpenTox::Dataset.new dataset
d.load_features
assert_equal 16, d.features.size
end
=begin
=end
end
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