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require 'rubygems'
require "rubygems"
require 'opentox-ruby'
require 'test/unit'
require 'akephalos'
require 'capybara/dsl'
gem 'capybara-envjs'
require 'capybara/envjs' # gem install capybara-envjs
Capybara.default_driver = :akephalos # use this without visual inspection
#Capybara.default_driver = :selenium # use this for visual inspection
Capybara.run_server = false
Capybara.default_wait_time = 1000
Capybara.javascript_driver = :envjs
class ToxCreateTest < Test::Unit::TestCase
include Capybara
def setup
@user = "guest"
@password = "guest"
end
def teardown
#puts Time.now.localtime.strftime("%Y-%m-%d %H:%M:%S")
sleep 5
end
def test_01_login
visit File.join(CONFIG[:services]["opentox-toxcreate"], "login")
assert page.has_content?('User: guest')
fill_in('Username', :with => @user)
fill_in('Password', :with => @password + "nonsense")
click_button('Login')
assert page.has_content? "Login failed. Please try again."
fill_in('Username', :with => @user)
fill_in('Password', :with => @password)
click_button('Login')
assert page.has_content? "Welcome #{@user}!"
visit File.join(CONFIG[:services]["opentox-toxcreate"], "login")
assert page.has_content?('User: guest')
fill_in('Username', :with => @user)
fill_in('Password', :with => @password + "nonsense")
click_button('Login')
assert page.has_content? "Login failed. Please try again."
click_button('Login as guest')
assert page.has_content? "Welcome #{@user}!"
end
def test_02_toxcreate # works only with akephalos
# create a model and check status is complete
Capybara.current_driver = :akephalos
#login(@browser, @user, @password)
visit File.join(CONFIG[:services]["opentox-toxcreate"], "create")#visit CONFIG[:services]["opentox-toxcreate"]
assert page.has_content?('Upload training data')
attach_file('file', "./data/hamster_carcinogenicity.csv")
click_on "Create model"
assert first("h2").has_content? "hamster_carcinogenicity"
time = 0
while (first(".model_status").has_no_content?("Completed") and first(".model_status").has_no_content?("Error")) do
sleep 5
time +=5
end
assert first(".model_status").has_content?("Completed")
end
def test_03_predict
# predict with the model from test_02
Capybara.register_driver :akephalos do |app|
Capybara::Driver::Akephalos.new(app, :validate_scripts => false)
end
session = Capybara::Session.new(:akephalos)
session.visit File.join(CONFIG[:services]["opentox-toxcreate"], "predict")#CONFIG[:services]["opentox-toxcreate"]
#session.click_on "Predict"
session.fill_in('identifier', :with => "NNc1ccccc1")
session.check "hamster_carcinogenicity"
session.click_button("Predict")
session.click_button("Details")
assert session.has_content? "false"
assert session.has_content? "0.294"
assert session.has_content? "0.875"
Capybara.reset_sessions!
end
def test_04_inspect_policies
visit File.join(CONFIG[:services]["opentox-toxcreate"], "models")#visit CONFIG[:services]["opentox-toxcreate"]
#click_on "Inspect"
assert first('h2').has_content? 'hamster_carcinogenicity'
click_on("edit name")
click_on("Cancel")
click_on("protect data")
within(:xpath, '//form[contains(@id, "form_policy_group_member_")]') do
find(:xpath, './/input[5]').click
click_on "update"
end
end
def test_05_inspect_policies
#visit CONFIG[:services]["opentox-toxcreate"]
#click_on "Inspect"
#assert first('h2').has_content? 'hamster_carcinogenicity'
#click_on "edit"
#click_on "manage policy"
within(:xpath, '//form[contains(@id, "form_policy_group_member_")]') do
find(:xpath, './/input[4]').click
click_on "update"
end
end
def test_06_inspect_policies
#visit CONFIG[:services]["opentox-toxcreate"]
#click_on "Inspect"
#assert first('h2').has_content? 'hamster_carcinogenicity'
#click_on "edit"
#click_on "manage policy"
within(:xpath, '//form[contains(@id, "form_development")]') do
find(:xpath, './/input[4]').click
click_on "add"
end
sleep 5
end
def test_07_inspect_policies
#visit CONFIG[:services]["opentox-toxcreate"]
#click_on "Inspect"
#assert first('h2').has_content? 'hamster_carcinogenicity'
#click_on "edit"
#click_on "manage policy"
within(:xpath, '//form[contains(@id, "form_policy_group_development_")]') do
find(:xpath, './/input[3]').click
click_on "update"
end
sleep 5
#page.evaluate_script('window.confirm = function() { return true; }')
click_on "exit"
end
def test_08_delete_model
click_on "delete"
end
=begin
def test_09_multi_cell_call
#login(@browser, @user, @password)
Capybara.current_driver = :akephalos
visit CONFIG[:services]["opentox-toxcreate"]
assert page.has_content?('Upload training data')
attach_file('file', "./data/multi_cell_call.csv")
click_on "Create model"
end
def test_10_kazius
Capybara.current_driver = :akephalos
#login(@browser, @user, @password)
visit CONFIG[:services]["opentox-toxcreate"]
assert page.has_content?('Upload training data')
attach_file('file', "./data/kazius.csv")
# wait until validation is completed
# check results (links, reports, results)
puts @browser.url
end
def test_11_parallel_models
#login(@browser, @user, @password)
10.times do
visit CONFIG[:services]["opentox-toxcreate"]
assert page.has_content?('Upload training data')
attach_file('file', "./data/multi_cell_call.csv")
click_on "Create model"
end
end
# raises capybara errors, but gui works from browser
def test_12_toxcreate_sdf # works only with akephalos
Capybara.current_driver = :akephalos
#login(@browser, @user, @password)
visit CONFIG[:services]["opentox-toxcreate"]
assert page.has_content?('Upload training data')
attach_file('file', "./data/hamster_carcinogenicity.sdf")
click_on "Create model"
assert first("h2").has_content? "hamster_carcinogenicity"
time = 0
while first(".model_status").has_no_content?("Completed") do
sleep 5
time +=5
end
assert first(".model_status").has_content?("Completed")
end
=end
end
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