diff options
| author | davor <vorgrimmlerdavid@gmx.de> | 2012-05-25 13:37:03 +0200 |
|---|---|---|
| committer | davor <vorgrimmlerdavid@gmx.de> | 2012-05-25 13:37:03 +0200 |
| commit | 2e2bf5590d56fae9aba995f48102c5d7849c0092 (patch) | |
| tree | 18c7cae21451150d7ab0419751c48ef76217374d | |
| parent | 7cd2ed8a07efcb22c0e57b0c19d95ce633e85c1c (diff) | |
Predicted value transformation to mg (for Nestle)
in single predictions.
| -rw-r--r-- | application.rb | 54 | ||||
| -rw-r--r-- | views/prediction.haml | 2 |
2 files changed, 50 insertions, 6 deletions
diff --git a/application.rb b/application.rb index eca26a5..34a11e3 100644 --- a/application.rb +++ b/application.rb @@ -547,12 +547,54 @@ post '/predict/?' do # post chemical name to model :error => "Not enough similar compounds in training dataset." } else - @predictions << { - :title => model.name, - :model_uri => model.uri, - :prediction => prediction_dataset.value(@compound), - :confidence => prediction_dataset.confidence(@compound) - } + if model.name.downcase.include? "ptd50" + ds = OpenTox::Dataset.new() + ds.save(@subjectid) + ds.add_compound(@compound.uri) + ds.save(@subjectid) + mw_algorithm_uri = File.join(CONFIG[:services]["opentox-algorithm"],"pc/MW") + mw_uri = OpenTox::RestClientWrapper.post(mw_algorithm_uri, {:dataset_uri=>ds.uri}) + ds.delete(@subjectid) + mw_ds = OpenTox::Dataset.find(mw_uri, @subjectid) + mw = mw_ds.data_entries[@compound.uri][mw_uri.to_s + "/feature/MW"].first + mw_ds.delete(@subjectid) + td50 = (((10**(-1.0*prediction_dataset.value(@compound)))*(mw.to_f*1000))*1000).round / 1000.0 + prediction_trans = "TD50: #{td50}" + elsif model.name.downcase.include? "loael" + if model.name.downcase.include? "mol" + ds = OpenTox::Dataset.new() + ds.save(@subjectid) + ds.add_compound(@compound.uri) + ds.save(@subjectid) + mw_algorithm_uri = File.join(CONFIG[:services]["opentox-algorithm"],"pc/MW") + mw_uri = OpenTox::RestClientWrapper.post(mw_algorithm_uri, {:dataset_uri=>ds.uri}) + ds.delete(@subjectid) + mw_ds = OpenTox::Dataset.find(mw_uri, @subjectid) + mw = mw_ds.data_entries[@compound.uri][mw_uri.to_s + "/feature/MW"].first + mw_ds.delete(@subjectid) + mg = (((10**(-1.0*prediction_dataset.value(@compound)))*(mw.to_f*1000))*1000).round / 1000.0 + prediction_trans = "mg/kg bw/day: #{mg}" + elsif model.name.downcase.include? "mg" + mg = ((10**prediction_dataset.value(@compound))*1000).round / 1000.0 + prediction_trans = "mg/kg bw/day: #{mg}" + end + end + if prediction_trans.nil? + @predictions << { + :title => model.name, + :model_uri => model.uri, + :prediction => prediction_dataset.value(@compound), + :confidence => prediction_dataset.confidence(@compound) + } + else + @predictions << { + :title => model.name, + :model_uri => model.uri, + :prediction => prediction_dataset.value(@compound), + :confidence => prediction_dataset.confidence(@compound), + :prediction_transformed => prediction_trans + } + end end end # TODO failed/unavailable predictions diff --git a/views/prediction.haml b/views/prediction.haml index 682b979..b83bc63 100644 --- a/views/prediction.haml +++ b/views/prediction.haml @@ -30,6 +30,8 @@ %br= p[:error] - else = activity_markup(p[:prediction], @value_map) + - if p[:prediction_transformed] + = p[:prediction_transformed] - if p[:confidence] %br ( |