diff options
Diffstat (limited to 'views/lazar_algorithm.haml')
| -rw-r--r-- | views/lazar_algorithm.haml | 47 |
1 files changed, 4 insertions, 43 deletions
diff --git a/views/lazar_algorithm.haml b/views/lazar_algorithm.haml index 76a993b..62c5ea4 100644 --- a/views/lazar_algorithm.haml +++ b/views/lazar_algorithm.haml @@ -14,51 +14,12 @@ %em (neighbors) and calculates the prediction from their measured activities. %code lazar - calculates predictions using - %ul - %li - a majority vote (weighted by compound similarity) for - %em classification - ( - %a{:href => "http://www.in-silico.de/articles/modi020905.pdf", :rel => "external"} original publication - ) - %li - a local QSAR model based on neighbors for - %em regression - ( - %a{:href => "http://www.in-silico.de/articles/mh_tf.pdf", :rel => "external"} original publication - ) - - %p - = toggle_link "#significant_fragments", "Significant fragments" - are highlighted in the structure display as follows: - - if @value_map.empty? - %ul - %li - .active activating fragments - %li - .inactive deactivating fragments - %li - .inconclusive regions, where activating and deactivating fragments overlap - %li - .other inert parts - - else - %ul - %li - .active= "features that occur predominately in compounds with activity: \"#{@value_map[@value_map.keys.sort.last]}\"" - %li - .inactive= "features that occur predominately in compounds with activity: \"#{@value_map[@value_map.keys.sort.first]}\"" - %li - .inconclusive regions, where fragments from different classes overlap - %li - .other inert parts - - if @value_map.size > 2 - .notice Incomplete implementation of feature highlighting and display of significant fragments. Only features for 2 classes are shown! - - + calculates predictions using a well-established radial basis function (rbf) kernel for SVMs + %em (regression) + %p Please keep in mind that predictions are based on the measured activities of neighbors. - = toggle_link "#significant_fragments", "Significant fragments" + = toggle_link "#pc_descriptors", "Physico chemical descriptors" are solely used to determine = toggle_link "#similarity", "activity specific similarities" of neighbors. |