From cd41ad0dbb9c1725283327018ad6b7ef311114b8 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Fri, 13 Apr 2012 11:14:23 +0000 Subject: deprecation notice added --- views/create.haml | 32 ++++++++++++++++++++++++++++++++ views/layout.haml | 2 +- views/predict.haml | 1 + 3 files changed, 34 insertions(+), 1 deletion(-) diff --git a/views/create.haml b/views/create.haml index 9b0ca09..fb0dbc5 100644 --- a/views/create.haml +++ b/views/create.haml @@ -27,6 +27,38 @@ .input + .notice + %h3 DEPRECATION NOTICE + During the last months we have added a lot of capabilities and algorithms to our framework and tested them with extensive model building and validation. We finally came to the conclusion that the creation of good models still requires a lot of human intervention and that we cannot recommend a simple 1-click interface as in the current ToxCreate version. + + %br + Until we have implemented an expert GUI interface you have the following options to construct models ( + %a{:href => "http://www.maunz.de"} Andreas Maunz + gives detailed instructions in his + %a{:href => "http://www.maunz.de/wordpress/topics/opentox"} OpenTox blog + ): + %ul + %li + %a{:href => "http://opentox.org/dev/apis/api-1.2"} OpenTox REST interface + %li + %a{:href => "https://github.com/opentox/opentox-ruby"} opentox-ruby + or + %a{:href => "https://github.com/opentox/opentox-client"} opentox-client + Ruby libraries. + %a{:href => "https://github.com/opentox/opentox-client"} opentox-client + is under development and will substitute + %a{:href => "https://github.com/opentox/opentox-ruby"} opentox-ruby + %li + %a{:href => "http://ambit.sourceforge.net//download_otclient.html"} IDEAConsult + or + %a{:href => "https://github.com/alphaville/ToxOtis"} ToxOtis + Java libraries + %li + %a{:href => "http://in-silico.ch"} in silico toxicology + offers model building as a paid service + We will keep the ToxCreate interface available for documentation purposes, but + %em strongly discourage + its use, because the resulting models may perform less than optimal. %p You will need to upload training data that includes chemical structures and their measured toxicity values, in = link_to "Excel", '/help' diff --git a/views/layout.haml b/views/layout.haml index 098c529..8a8ccc8 100644 --- a/views/layout.haml +++ b/views/layout.haml @@ -58,7 +58,7 @@ = tagdate © %a{:href => 'http://www.in-silico.ch', :rel => "external"} in silico toxicology - 2009-2011, powered by + 2009-2012, powered by %a{:href => 'http://www.opentox.org', :rel => "external"} OpenTox (a project funded by the %a{:href => "http://cordis.europa.eu/fp7/", :rel => "external"} 7th Framework Programme diff --git a/views/predict.haml b/views/predict.haml index c6097ac..e467ef6 100644 --- a/views/predict.haml +++ b/views/predict.haml @@ -6,6 +6,7 @@ } .input + %p Use this service to obtain predictions from OpenTox models. - unless @models.empty? -- cgit v1.2.3 From 6fc261cb3e6f39b55a206353fb9bc5c7d5479d7b Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Fri, 13 Apr 2012 11:56:58 +0000 Subject: documentation URL changed --- views/create.haml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/views/create.haml b/views/create.haml index fb0dbc5..4f03248 100644 --- a/views/create.haml +++ b/views/create.haml @@ -34,8 +34,8 @@ %br Until we have implemented an expert GUI interface you have the following options to construct models ( %a{:href => "http://www.maunz.de"} Andreas Maunz - gives detailed instructions in his - %a{:href => "http://www.maunz.de/wordpress/topics/opentox"} OpenTox blog + gives detailed instructions at + %a{:href => "http://opentox-ruby.maunz.de"} http://opentox-ruby.maunz.de ): %ul %li -- cgit v1.2.3