From 7dbcfb7b0df30c55d79574d5133f9ba9cf135a9f Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Thu, 31 Mar 2011 14:27:35 +0200
Subject: validation skipped for locahost installations

---
 application.rb | 27 ++++++++++++---------------
 1 file changed, 12 insertions(+), 15 deletions(-)

(limited to 'application.rb')

diff --git a/application.rb b/application.rb
index 400109b..7ada4ce 100644
--- a/application.rb
+++ b/application.rb
@@ -239,16 +239,20 @@ post '/models' do # create a new model
     end
     @model.update :type => type, :feature_dataset => lazar.metadata[OT.featureDataset], :uri => lazar.uri
 
-    unless url_for("",:full).match(/localhost/)
+    if url_for("",:full).match(/localhost/)
+      @model.update(:status => "Completed") #, :warnings => @model.warnings + "\nValidation service cannot be accessed from localhost.")
+      task.progress(100)
+    else
       @model.update :status => "Validating model"
       begin
-        validation = OpenTox::Crossvalidation.create(
-          {:algorithm_uri => lazar.metadata[OT.algorithm],
-          :dataset_uri => lazar.parameter("dataset_uri"),
-          :subjectid => subjectid,
-          :prediction_feature => lazar.parameter("prediction_feature"),
-          :algorithm_params => "feature_generation_uri=#{lazar.parameter("feature_generation_uri")}"},
-         nil, OpenTox::SubTask.new(task,25,80))
+        validation = OpenTox::Crossvalidation.create( {
+            :algorithm_uri => lazar.metadata[OT.algorithm],
+            :dataset_uri => lazar.parameter("dataset_uri"),
+            :subjectid => subjectid,
+            :prediction_feature => lazar.parameter("prediction_feature"),
+            :algorithm_params => "feature_generation_uri=#{lazar.parameter("feature_generation_uri")}" },
+            nil, OpenTox::SubTask.new(task,25,80))
+
         @model.update(:validation_uri => validation.uri)
         LOGGER.debug "Validation URI: #{@model.validation_uri}"
 
@@ -274,13 +278,6 @@ post '/models' do # create a new model
       end
       
     end
-
-
-    #@model.warnings += "<p>Incorrect Smiles structures (ignored):</p>" + parser.smiles_errors.join("<br/>") unless parser.smiles_errors.empty?
-    #@model.warnings += "<p>Irregular activities (ignored):</p>" + parser.activity_errors.join("<br/>") unless parser.activity_errors.empty?
-    #duplicate_warnings = ''
-    #parser.duplicates.each {|inchi,lines| duplicate_warnings += "<p>#{lines.join('<br/>')}</p>" if lines.size > 1 }
-    #@model.warnings += "<p>Duplicated structures (all structures/activities used for model building, please  make sure, that the results were obtained from <em>independent</em> experiments):</p>" + duplicate_warnings unless duplicate_warnings.empty?
     lazar.uri
   end
   @model.update :task_uri => task.uri
-- 
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