diff options
| author | Christoph Helma <helma@in-silico.ch> | 2013-07-12 18:13:40 +0200 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2013-07-12 18:13:40 +0200 |
| commit | 4c848ed19705f7474e7081499ccf88b717242561 (patch) | |
| tree | e3b07472ee062987f5745882e5cb1ebd620b7232 | |
| parent | b63793f1729eb16465801b144cc26c9ee57a89e1 (diff) | |
value type identification/conversion fixed
| -rwxr-xr-x | validation/validation_service.rb | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/validation/validation_service.rb b/validation/validation_service.rb index f044b1e..80a7b6b 100755 --- a/validation/validation_service.rb +++ b/validation/validation_service.rb @@ -169,7 +169,6 @@ module Validation #model = OpenTox::Model::PredictionModel.find(self.model_uri) #resource_not_found_error "model not found: "+self.model_uri.to_s unless model model = OpenTox::Model::Generic.new(self.model_uri, self.subjectid) - #model.get unless self.algorithm_uri self.algorithm_uri = model.metadata[RDF::OT.algorithm] @@ -183,7 +182,9 @@ module Validation prediction_dataset_uri = "" benchmark = Benchmark.measure do #prediction_dataset_uri = model.predict_dataset(self.test_dataset_uri, OpenTox::SubTask.create(task, 0, 50)) - puts self.test_dataset_uri + #puts self.test_dataset_uri + #puts "MODEL" + #puts model.uri prediction_dataset_uri = model.run({:dataset_uri => self.test_dataset_uri, :subjectid => self.subjectid}) #"text/uri-list",OpenTox::SubTask.create(task, 0, 50)) end @@ -649,7 +650,7 @@ module Validation meta[RDF::DC.title] = "Training dataset split of "+orig_dataset.uri result = {} - train_data = orig_dataset.split( training_compound_indices, orig_dataset.features, meta, subjectid ) + train_data = orig_dataset.split( training_compound_indices, orig_dataset.features, meta ) est_num_train_compounds = (orig_dataset.compounds.size*split_ratio).round internal_server_error "Train dataset num coumpounds != #{est_num_train_compounds}, instead: "+train_data.compounds.size.to_s unless train_data.compounds.size==est_num_train_compounds @@ -657,7 +658,7 @@ module Validation task.progress(66) if task meta[RDF::DC.title] = "Test dataset split of "+orig_dataset.uri - test_data = orig_dataset.split( test_compound_indices, orig_dataset.features, meta, subjectid ) + test_data = orig_dataset.split( test_compound_indices, orig_dataset.features, meta ) est_num_test_compounds = orig_dataset.compounds.size-est_num_train_compounds internal_server_error "Test dataset num coumpounds != #{est_num_test_compounds}, instead: "+test_data.compounds.size.to_s unless test_data.compounds.size==est_num_test_compounds |