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| author | mguetlein <martin.guetlein@gmail.com> | 2010-05-07 14:10:27 +0200 |
|---|---|---|
| committer | mguetlein <martin.guetlein@gmail.com> | 2010-05-07 14:10:27 +0200 |
| commit | 6f437cd052fef1dfcdf2317688a78442d2d8a1f7 (patch) | |
| tree | 91aa05c488293b22d07222a1629a1093013245c7 /example.rb | |
| parent | 3c7ab47857f9f86caca6cdddfe7f6ef8672db797 (diff) | |
fix feature encoding, add comparables report to nightly
Diffstat (limited to 'example.rb')
| -rw-r--r-- | example.rb | 5 |
1 files changed, 3 insertions, 2 deletions
@@ -6,7 +6,8 @@ class Example @@file=File.new("data/hamster_carcinogenicity.yaml","r") @@file_type="text/x-yaml" @@model=File.join @@config[:services]["opentox-model"],"1" - @@feature="http://localhost/toxmodel/feature%23Hamster%20Carcinogenicity%20(DSSTOX/CPDB)" + #@@feature="http://localhost/toxmodel/feature%23Hamster%20Carcinogenicity%20(DSSTOX/CPDB)" + @@feature= "http://localhost/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)" @@alg = File.join @@config[:services]["opentox-algorithm"],"lazar" @@alg_params = "feature_generation_uri="+File.join(@@config[:services]["opentox-algorithm"],"fminer") @@data=File.join @@config[:services]["opentox-dataset"],"1" @@ -75,7 +76,7 @@ class Example log "crossvalidation" Lib::Crossvalidation.auto_migrate! cv = Validation::Crossvalidation.new({ :dataset_uri => data_uri, :algorithm_uri => @@alg, :num_folds => 5, :stratified => false }) - cv.create_cv_datasets( URI.decode(@@feature) ) + cv.create_cv_datasets( URI.decode(@@feature) ) cv.perform_cv( @@alg_params ) log "create validation report" |