diff options
author | Martin Gütlein <martin.guetlein@gmail.com> | 2009-11-24 10:26:17 +0100 |
---|---|---|
committer | Martin Gütlein <martin.guetlein@gmail.com> | 2009-11-24 10:26:17 +0100 |
commit | db65b03dc761f7788dad5bdbfd9e0d7e8376f6cb (patch) | |
tree | 108a823cdd26b0f47360d4a3f45502e52735150c /report/validation_access.rb | |
parent | 199a350dfda66a918bd52b59e7f511a9cc19fd63 (diff) |
add prediction_feature param
Diffstat (limited to 'report/validation_access.rb')
-rw-r--r-- | report/validation_access.rb | 22 |
1 files changed, 16 insertions, 6 deletions
diff --git a/report/validation_access.rb b/report/validation_access.rb index 5f04472..ed19c14 100644 --- a/report/validation_access.rb +++ b/report/validation_access.rb @@ -16,7 +16,7 @@ class Reports::ValidationAccess raise "not implemented" end - def get_predictions( test_dataset_uri, prediction_dataset_uri) + def get_predictions( prediction_feature, test_dataset_uri, prediction_dataset_uri) raise "not implemented" end @@ -52,6 +52,10 @@ class Reports::ValidationDB < Reports::ValidationAccess validation.send("#{p.to_s}=".to_sym, v[p]) end + model = OpenTox::Model::LazarClassificationModel.new(v[:model_uri]) + raise "cannot access model '"+v[:model_uri].to_s+"'" unless model + validation.prediction_feature = model.get_prediction_feature + {OpenTox::Validation::VAL_CLASS_PROP => OpenTox::Validation::VAL_CLASS_PROPS}.each do |subset_name,subset_props| subset = v[subset_name] subset_props.each{ |prop| validation.send("#{prop.to_s}=".to_sym, subset[prop]) } if subset @@ -68,8 +72,8 @@ class Reports::ValidationDB < Reports::ValidationAccess end end - def get_predictions( test_dataset_uri, prediction_dataset_uri) - Lib::Predictions.new( test_dataset_uri, prediction_dataset_uri) + def get_predictions( prediction_feature, test_dataset_uri, prediction_dataset_uri) + Lib::Predictions.new( prediction_feature, test_dataset_uri, prediction_dataset_uri) end end @@ -107,6 +111,10 @@ class Reports::ValidationWebservice < Reports::ValidationAccess validation.send("#{p}=".to_sym, data[p]) end + model = OpenTox::Model::LazarClassificationModel.new(v[:model_uri]) + raise "cannot access model '"+v[:model_uri].to_s+"'" unless model + validation.prediction_feature = model.get_prediction_feature + {OpenTox::Validation::VAL_CV_PROP => OpenTox::Validation::VAL_CV_PROPS, OpenTox::Validation::VAL_CLASS_PROP => OpenTox::Validation::VAL_CLASS_PROPS}.each do |subset_name,subset_props| subset = data[subset_name] @@ -130,8 +138,8 @@ class Reports::ValidationWebservice < Reports::ValidationAccess end end - def get_predictions( test_dataset_uri, prediction_dataset_uri) - Lib::Predictions.new( test_dataset_uri, prediction_dataset_uri) + def get_predictions( prediction_feature, test_dataset_uri, prediction_dataset_uri) + Lib::Predictions.new( prediction_feature, test_dataset_uri, prediction_dataset_uri) end end @@ -197,6 +205,8 @@ class Reports::ValidationMockLayer < Reports::ValidationAccess validation.training_dataset_uri = @datasets[@count] validation.test_dataset_uri = @datasets[@count] + validation.prediction_feature = "classification" + @count += 1 end @@ -212,7 +222,7 @@ class Reports::ValidationMockLayer < Reports::ValidationAccess #validation.CV_dataset_name = @datasets[validation.crossvalidation_id.to_i * NUM_FOLDS] end - def get_predictions(test_dataset_uri, prediction_dataset_uri) + def get_predictions( prediction_feature, test_dataset_uri, prediction_dataset_uri) p = Array.new c = Array.new |