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authorChristoph Helma <helma@in-silico.ch>2013-03-27 17:13:03 +0100
committerChristoph Helma <helma@in-silico.ch>2013-03-27 17:13:03 +0100
commit10d550ac1ac5c70231dbfce32e18c603f307b1f0 (patch)
treea3036887c32d2556f9c72d838b0bebb6f21ae102 /report
parent4c23e95dab563d74b4e86404608cc356a9b20875 (diff)
validation tests ok
Diffstat (limited to 'report')
-rwxr-xr-xreport/report_application.rb1
-rwxr-xr-xreport/report_persistance.rb2
-rwxr-xr-xreport/validation_access.rb10
3 files changed, 7 insertions, 6 deletions
diff --git a/report/report_application.rb b/report/report_application.rb
index 1273463..a4d3d1f 100755
--- a/report/report_application.rb
+++ b/report/report_application.rb
@@ -145,6 +145,7 @@ class Validation::Application < OpenTox::Service
bad_request_error "validation_uris missing" unless params[:validation_uris].to_s.size>0
task = OpenTox::Task.run("Create report",to("/validation/report/"+params[:type], :full)) do |task| #,params
perform do |rs|
+ puts rs.inspect
rs.create_report(params[:type],params[:validation_uris]?params[:validation_uris].split(/\n|,/):nil,
params[:identifier]?params[:identifier].split(/\n|,/):nil,params,@subjectid,task)
end
diff --git a/report/report_persistance.rb b/report/report_persistance.rb
index 6832b0f..a0f16d5 100755
--- a/report/report_persistance.rb
+++ b/report/report_persistance.rb
@@ -234,7 +234,7 @@ module Reports
def to_rdf
s = OpenTox::Serializer::Owl.new
- s.add_resource(report_uri,OT.Report,get_content_as_hash.keys_to_rdf_format.keys_to_owl_uris)
+ s.add_resource(report_uri,RDF::OT.Report,get_content_as_hash.keys_to_rdf_format.keys_to_owl_uris)
s.to_rdfxml
end
end
diff --git a/report/validation_access.rb b/report/validation_access.rb
index fe2c401..c6f6d2f 100755
--- a/report/validation_access.rb
+++ b/report/validation_access.rb
@@ -177,7 +177,7 @@ class Reports::ValidationDB
uri = OpenTox::RestClientWrapper.post(feat_gen,{:subjectid => subjectid,
:feature_dataset_uri=>training_feature_dataset_uri(validation,subjectid),
:dataset_uri=>validation.test_dataset_uri})
- @@tmp_resources << OpenTox.wait_for_task(uri)
+ @@tmp_resources << wait_for_task(uri)
end
uri
end
@@ -219,8 +219,8 @@ class Reports::ValidationDB
def feature_type( validation, subjectid=nil )
m = OpenTox::Model.new(validation.model_uri,subjectid)
- m.get
- m.feature_type(subjectid)
+ #m.get
+ m.feature_type
#get_model(validation).classification?
end
@@ -229,7 +229,7 @@ class Reports::ValidationDB
model = OpenTox::Model.new(validation.model_uri,subjectid)
model.get
resource_not_found_error "model not found '"+validation.model_uri+"'" unless model
- model.predicted_variable(subjectid)
+ model.predicted_variable
end
def predicted_confidence(validation, subjectid=nil)
@@ -237,7 +237,7 @@ class Reports::ValidationDB
model = OpenTox::Model.new(validation.model_uri,subjectid)
model.get
resource_not_found_error "model not found '"+validation.model_uri+"'" unless model
- model.predicted_confidence(subjectid)
+ model.predicted_confidence
end
# private