diff options
Diffstat (limited to 'example.rb')
| -rwxr-xr-x | example.rb | 39 |
1 files changed, 39 insertions, 0 deletions
@@ -58,6 +58,44 @@ class Example #TODO subjectid = nil +<<<<<<< HEAD + #delete_all(CONFIG[:services]["opentox-dataset"]) + log OpenTox::RestClientWrapper.delete CONFIG[:services]["opentox-dataset"] + + log "upload dataset" + halt 400,"File not found: "+@@file.path.to_s unless File.exist?(@@file.path) + data = File.read(@@file.path) + data_uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"],{:content_type => @@file_type},data).chomp("\n") + + log "train-test-validation" + #delete_all(CONFIG[:services]["opentox-model"]) + OpenTox::RestClientWrapper.delete CONFIG[:services]["opentox-model"] + + split_params = Validation::Util.train_test_dataset_split(data_uri, URI.decode(@@feature), 0.9, 1) + v = Validation::Validation.new :training_dataset_uri => split_params[:training_dataset_uri], + :test_dataset_uri => split_params[:test_dataset_uri], + :test_target_dataset_uri => data_uri, + :prediction_feature => URI.decode(@@feature), + :algorithm_uri => @@alg + v.validate_algorithm( @@alg_params ) + + log "crossvalidation" + cv = Validation::Crossvalidation.new({ :dataset_uri => data_uri, :algorithm_uri => @@alg, :num_folds => 5, :stratified => false }) + cv.create_cv_datasets( URI.decode(@@feature) ) + cv.perform_cv( @@alg_params ) + + log "create validation report" + rep = Reports::ReportService.new(File.join(CONFIG[:services]["opentox-validation"],"report")) + rep.delete_all_reports("validation") + rep.create_report("validation",v.validation_uri) + + log "create crossvalidation report" + rep.delete_all_reports("crossvalidation") + rep.create_report("crossvalidation",cv.crossvalidation_uri) + + log "done" + @@summary +======= task = OpenTox::Task.create("prepare examples", "n/a") do |task| @@summary = "" #delete validations @@ -125,6 +163,7 @@ class Example @@summary end return_task(task) +>>>>>>> mguetlein/test end # performs all curl calls listed in examples after ">>>", next line is added if line ends with "\" |