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-rwxr-xr-xreport/validation_access.rb29
1 files changed, 17 insertions, 12 deletions
diff --git a/report/validation_access.rb b/report/validation_access.rb
index 53ecc46..e9b6e19 100755
--- a/report/validation_access.rb
+++ b/report/validation_access.rb
@@ -21,11 +21,11 @@ class Reports::ValidationDB
# rescue => ex
# raise "could not access crossvalidation with id "+validation_id.to_s+", error-msg: "+ex.message
# end
- cv = Lib::Crossvalidation.get( cv_id )
+ cv = Validation::Crossvalidation.get( cv_id )
raise OpenTox::NotFoundError.new "crossvalidation with id "+cv_id.to_s+" not found" unless cv
raise OpenTox::BadRequestError.new("crossvalidation with id '"+cv_id.to_s+"' not finished") unless cv.finished
- #res += Lib::Validation.find( :all, :conditions => { :crossvalidation_id => cv_id } ).collect{|v| v.validation_uri.to_s}
- res += Lib::Validation.all( :crossvalidation_id => cv_id ).collect{|v| v.validation_uri.to_s }
+ #res += Validation::Validation.find( :all, :conditions => { :crossvalidation_id => cv_id } ).collect{|v| v.validation_uri.to_s}
+ res += Validation::Validation.find( :crossvalidation_id => cv_id ).collect{|v| v.validation_uri.to_s }
else
res += [u.to_s]
end
@@ -42,16 +42,16 @@ class Reports::ValidationDB
v = nil
raise OpenTox::NotAuthorizedError.new "Not authorized: GET "+uri.to_s if
AA_SERVER and !OpenTox::Authorization.authorized?(uri,"GET",subjectid)
- v = Lib::Validation.get(validation_id)
+ v = Validation::Validation.get(validation_id)
raise OpenTox::NotFoundError.new "validation with id "+validation_id.to_s+" not found" unless v
raise OpenTox::BadRequestError.new "validation with id "+validation_id.to_s+" is not finished yet" unless v.finished
- (Lib::VAL_PROPS + Lib::VAL_CV_PROPS).each do |p|
+ (Validation::VAL_PROPS + Validation::VAL_CV_PROPS).each do |p|
validation.send("#{p.to_s}=".to_sym, v.send(p))
end
- {:classification_statistics => Lib::VAL_CLASS_PROPS,
- :regression_statistics => Lib::VAL_REGR_PROPS}.each do |subset_name,subset_props|
+ {:classification_statistics => Validation::VAL_CLASS_PROPS,
+ :regression_statistics => Validation::VAL_REGR_PROPS}.each do |subset_name,subset_props|
subset = v.send(subset_name)
subset_props.each{ |prop| validation.send("#{prop.to_s}=".to_sym, subset[prop]) } if subset
end
@@ -60,11 +60,11 @@ class Reports::ValidationDB
def init_cv(validation)
#cv = Lib::Crossvalidation.find(validation.crossvalidation_id)
- cv = Lib::Crossvalidation.get(validation.crossvalidation_id)
+ cv = Validation::Crossvalidation.get(validation.crossvalidation_id)
raise OpenTox::BadRequestError.new "no crossvalidation found with id "+validation.crossvalidation_id.to_s unless cv
- Lib::CROSS_VAL_PROPS.each do |p|
- validation.send("#{p.to_s}=".to_sym, cv[p])
+ Validation::CROSS_VAL_PROPS.each do |p|
+ validation.send("#{p.to_s}=".to_sym, cv.send(p.to_s))
end
end
@@ -74,8 +74,13 @@ class Reports::ValidationDB
validation.predicted_variable, subjectid, task)
end
- def get_class_domain( validation )
- OpenTox::Feature.new( validation.prediction_feature ).domain
+ def get_accept_values( validation, subjectid=nil )
+ # PENDING So far, one has to load the whole dataset to get the accept_value from ambit
+ d = OpenTox::Dataset.find( validation.test_target_dataset_uri, subjectid )
+ accept_values = d.features[validation.prediction_feature][OT.acceptValue]
+ raise "cannot get accept values from dataset "+validation.test_target_dataset_uri.to_s+" for feature "+
+ validation.prediction_feature+":\n"+d.features[validation.prediction_feature].to_yaml unless accept_values!=nil
+ accept_values
end
def feature_type( validation, subjectid=nil )