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-rwxr-xr-xtest/test_examples.rb40
1 files changed, 26 insertions, 14 deletions
diff --git a/test/test_examples.rb b/test/test_examples.rb
index 63fb505..45d7035 100755
--- a/test/test_examples.rb
+++ b/test/test_examples.rb
@@ -110,9 +110,11 @@ module ValidationExamples
class HamsterSplit < SplitTestValidation
def initialize
- @dataset_file = File.new("data/hamster_carcinogenicity.yaml","r")
- #@prediction_feature = "http://localhost/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)"
- @prediction_feature = "http://localhost/dataset/1/feature/hamster_carcinogenicity"
+ #@dataset_file = File.new("data/hamster_carcinogenicity.yaml","r")
+ @dataset_file = File.new("data/hamster_carcinogenicity.csv","r")
+
+ #@prediction_feature = "http://local-ot/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)"
+ #@prediction_feature = "http://local-ot/dataset/1/feature/hamster_carcinogenicity"
end
end
@@ -135,9 +137,11 @@ module ValidationExamples
class HamsterBootstrapping < BootstrappingValidation
def initialize
- @dataset_file = File.new("data/hamster_carcinogenicity.yaml","r")
- #@prediction_feature = "http://localhost/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)"
- @prediction_feature = "http://localhost/dataset/1/feature/hamster_carcinogenicity"
+ #@dataset_file = File.new("data/hamster_carcinogenicity.yaml","r")
+ @dataset_file = File.new("data/hamster_carcinogenicity.csv","r")
+
+ #@prediction_feature = "http://local-ot/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)"
+ #@prediction_feature = "http://local-ot/dataset/1/feature/hamster_carcinogenicity"
end
end
@@ -160,11 +164,17 @@ module ValidationExamples
class HamsterTrainingTest < TrainingTestValidation
def initialize
- @test_target_dataset_file = File.new("data/hamster_carcinogenicity.yaml","r")
- @training_dataset_file = File.new("data/hamster_carcinogenicity.train.yaml","r")
- @test_dataset_file = File.new("data/hamster_carcinogenicity.test.yaml","r")
- #@prediction_feature = "http://localhost/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)"
- @prediction_feature = "http://localhost/dataset/1/feature/hamster_carcinogenicity"
+# @test_target_dataset_file = File.new("data/hamster_carcinogenicity.yaml","r")
+# @training_dataset_file = File.new("data/hamster_carcinogenicity.train.yaml","r")
+# @test_dataset_file = File.new("data/hamster_carcinogenicity.test.yaml","r")
+
+ @test_target_dataset_file = File.new("data/hamster_carcinogenicity.csv","r")
+ @training_dataset_file = File.new("data/hamster_carcinogenicity.train.csv","r")
+ @test_dataset_file = File.new("data/hamster_carcinogenicity.test.csv","r")
+
+
+ #@prediction_feature = "http://local-ot/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)"
+ #@prediction_feature = "http://local-ot/dataset/1/feature/hamster_carcinogenicity"
end
end
@@ -187,9 +197,11 @@ module ValidationExamples
class HamsterCrossvalidation < CrossValidation
def initialize
- @dataset_file = File.new("data/hamster_carcinogenicity.yaml","r")
- #@prediction_feature = "http://localhost/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)"
- @prediction_feature = "http://localhost/dataset/1/feature/hamster_carcinogenicity"
+ #@dataset_file = File.new("data/hamster_carcinogenicity.yaml","r")
+ @dataset_file = File.new("data/hamster_carcinogenicity.csv","r")
+
+ #@prediction_feature = "http://local-ot/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)"
+ #@prediction_feature = "http://local-ot/dataset/1/feature/hamster_carcinogenicity"
@num_folds = 10
end
end