diff options
Diffstat (limited to 'test/test_examples.rb')
-rw-r--r-- | test/test_examples.rb | 52 |
1 files changed, 52 insertions, 0 deletions
diff --git a/test/test_examples.rb b/test/test_examples.rb index beeaa30..e65e03d 100644 --- a/test/test_examples.rb +++ b/test/test_examples.rb @@ -9,6 +9,53 @@ end module ValidationExamples + class IrisCrossvalidation < CrossValidation + def initialize + @dataset_file = File.new("data/IRIS_unitrisk.yaml","r") + @prediction_feature = "http://ot-dev.in-silico.ch/toxcreate/feature#IRIS%20unit%20risk" + @num_folds = 10 + end + end + + class MajorityIrisCrossvalidation < IrisCrossvalidation + def initialize + @algorithm_uri = File.join(@@config[:services]["opentox-majority"],"/regr/algorithm") + super + end + end + + class LazarIrisCrossvalidation < IrisCrossvalidation + def initialize + @algorithm_uri = File.join(@@config[:services]["opentox-algorithm"],"lazar") + @algorithm_params = "feature_generation_uri="+File.join(@@config[:services]["opentox-algorithm"],"fminer") + super + end + end + + ######################################################################################################## + + class IrisSplit < SplitTestValidation + def initialize + @dataset_file = File.new("data/IRIS_unitrisk.yaml","r") + @prediction_feature = "http://ot-dev.in-silico.ch/toxcreate/feature#IRIS%20unit%20risk" + end + end + + class LazarIrisSplit < IrisSplit + def initialize + @algorithm_uri = File.join(@@config[:services]["opentox-algorithm"],"lazar") + @algorithm_params = "feature_generation_uri="+File.join(@@config[:services]["opentox-algorithm"],"fminer") + super + end + end + + class MajorityIrisSplit < IrisSplit + def initialize + @algorithm_uri = File.join(@@config[:services]["opentox-majority"],"/regr/algorithm") + super + end + end + ######################################################################################################## class HamsterSplit < SplitTestValidation @@ -192,6 +239,11 @@ module ValidationExamples "6b" => [ MLR_NTUA_CacoTrainingTest ], "6c" => [ MLR_NTUA2_CacoTrainingTest ], "6d" => [ MajorityCacoTrainingTest ], + + "7a" => [ LazarIrisSplit ], + "7b" => [ MajorityIrisSplit ], + + "8b" => [ MajorityIrisCrossvalidation ], } def self.list |