From 1c5ec5209ae87cee830a0ca362e8b5d61a700ced Mon Sep 17 00:00:00 2001
From: rautenberg <rautenberg@in-silico.ch>
Date: Mon, 27 Apr 2015 22:46:54 +0200
Subject: initial yardoc documentation

---
 .gitignore                           |  1 +
 .yardopts                            |  5 ++++-
 validation/validation_application.rb | 39 ++++++++++++++++++++++++++++++++----
 3 files changed, 40 insertions(+), 5 deletions(-)

diff --git a/.gitignore b/.gitignore
index bee53e8..050a938 100644
--- a/.gitignore
+++ b/.gitignore
@@ -12,3 +12,4 @@ Gemfile.lock
 redis-2.4.4
 redis-2.4.4 redis-2.4.4.tar.gz
 redis-2.4.4.tar.gz
+*~
diff --git a/.yardopts b/.yardopts
index c1a7ad0..e0110a3 100644
--- a/.yardopts
+++ b/.yardopts
@@ -1 +1,4 @@
-application.rb
+--readme README.md
+--title 'OpenTox Validation Documentation'
+--charset utf-8
+*.rb **/*.rb - README.md ChangeLog VERSION LICENSE
diff --git a/validation/validation_application.rb b/validation/validation_application.rb
index ed8083c..b5e785e 100755
--- a/validation/validation_application.rb
+++ b/validation/validation_application.rb
@@ -28,11 +28,23 @@ class Validation::Application < OpenTox::Application
       $url_provider = self
     end
     
-    # for service check
+    # @!group URI Routes
+
+    # @method head_validation
+    # @overload head "/validation/?"
+    # Head request to check service availability.
+    # @return [String] only HTTP headers.
     head '/validation/?' do
       #$logger.debug "Validation service is running."
     end
-    
+
+    # @method get_cv
+    # @overload get "/validation/crossvalidation/?"
+    # List crossvalidation URIs.
+    # @param header [hash]
+    #   * Accept [optional, String] <text/uri-list, text/html>
+    #   * subjectid [String] authorization token
+    # @return [String] text/uri-list, text/html List of crossvalidations.
     get '/validation/crossvalidation/?' do
       $logger.info "list all crossvalidations "+params.inspect
       model_uri = params.delete("model") || params.delete("model_uri")
@@ -65,7 +77,26 @@ class Validation::Application < OpenTox::Application
         uri_list
       end
     end
-    
+
+    # @method post_cv
+    # @overload post "/validation/crossvalidation/?"
+    # Performs a k-fold cross-validation.
+    # @param header [Hash] header values
+    #   * Accept [String] <'multipart/form-data'>
+    #   * subjectid [String] authorization token
+    # @param [Hash] params
+    #   * dataset_uri [String] dataset URI
+    #   * algorithm_uri [String] algorithm URI
+    #   * prediction_feature [String] URI to prediction feature
+    #   * algorithm_params [String] @todo is it optional?
+    #   * stratified [String, Optional]
+    #   * num_fold [Integer] number of folds default=10
+    #   * random_seed [Integer] default=1
+    #   * y_scramble [Boolean], default=false
+    #   * y_scramble_seed [Integer] default=1
+    # @return [String] text/uri-list Task URI.
+    # @raise [BadRequestError] without params: dataset_uri, algorithm_uri and prediction_feature.
+    # @raise [BadRequestError] unless param: num_fold is integer and > 1
     post '/validation/crossvalidation/?' do
       $logger.info "creating crossvalidation "+params.inspect
       bad_request_error "dataset_uri missing" unless params[:dataset_uri].to_s.size>0
@@ -717,5 +748,5 @@ class Validation::Application < OpenTox::Application
       content_type "text/plain"
       validation.delete_validation
     end 
-
+    # @!endgroup
 end
-- 
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