From d5378ac285f200a9a75b52030856c77f4697325f Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Tue, 20 Jul 2010 11:25:37 +0200 Subject: @@config -> CONFIG --- example.rb | 26 +++++++++++++------------- 1 file changed, 13 insertions(+), 13 deletions(-) (limited to 'example.rb') diff --git a/example.rb b/example.rb index b0de21d..b3eed88 100644 --- a/example.rb +++ b/example.rb @@ -5,13 +5,13 @@ class Example @@file=File.new("data/hamster_carcinogenicity.yaml","r") @@file_type="text/x-yaml" - @@model=File.join @@config[:services]["opentox-model"],"1" + @@model=File.join CONFIG[:services]["opentox-model"],"1" @@feature= URI.encode("http://localhost/toxmodel/feature#Hamster%20Carcinogenicity%20(DSSTOX/CPDB)") - @@alg = File.join @@config[:services]["opentox-algorithm"],"lazar" - @@alg_params = "feature_generation_uri="+File.join(@@config[:services]["opentox-algorithm"],"fminer") - @@data=File.join @@config[:services]["opentox-dataset"],"1" - @@train_data=File.join @@config[:services]["opentox-dataset"],"2" - @@test_data=File.join @@config[:services]["opentox-dataset"],"3" + @@alg = File.join CONFIG[:services]["opentox-algorithm"],"lazar" + @@alg_params = "feature_generation_uri="+File.join(CONFIG[:services]["opentox-algorithm"],"fminer") + @@data=File.join CONFIG[:services]["opentox-dataset"],"1" + @@train_data=File.join CONFIG[:services]["opentox-dataset"],"2" + @@test_data=File.join CONFIG[:services]["opentox-dataset"],"3" @@css_file="http://apps.ideaconsult.net:8080/ToxPredict/style/global.css" @@summary="" @@ -26,7 +26,7 @@ class Example end file.close - sub = { "validation_service" => @@config[:services]["opentox-validation"].chomp("/"), + sub = { "validation_service" => CONFIG[:services]["opentox-validation"].chomp("/"), "validation_id" => "1", "model_uri" => @@model, "dataset_uri" => @@data, @@ -58,17 +58,17 @@ class Example ActiveRecord::Migrator.migrate('db/migrate', 1 ) ActiveRecord::Migrator.migrate('db/migrate', 2 ) - #delete_all(@@config[:services]["opentox-dataset"]) - log OpenTox::RestClientWrapper.delete @@config[:services]["opentox-dataset"] + #delete_all(CONFIG[:services]["opentox-dataset"]) + log OpenTox::RestClientWrapper.delete CONFIG[:services]["opentox-dataset"] log "upload dataset" halt 400,"File not found: "+@@file.path.to_s unless File.exist?(@@file.path) data = File.read(@@file.path) - data_uri = OpenTox::RestClientWrapper.post(@@config[:services]["opentox-dataset"],{:content_type => @@file_type},data).chomp("\n") + data_uri = OpenTox::RestClientWrapper.post(CONFIG[:services]["opentox-dataset"],{:content_type => @@file_type},data).chomp("\n") log "train-test-validation" - #delete_all(@@config[:services]["opentox-model"]) - OpenTox::RestClientWrapper.delete @@config[:services]["opentox-model"] + #delete_all(CONFIG[:services]["opentox-model"]) + OpenTox::RestClientWrapper.delete CONFIG[:services]["opentox-model"] split_params = Validation::Util.train_test_dataset_split(data_uri, URI.decode(@@feature), 0.9, 1) v = Validation::Validation.new :training_dataset_uri => split_params[:training_dataset_uri], @@ -84,7 +84,7 @@ class Example cv.perform_cv( @@alg_params ) log "create validation report" - rep = Reports::ReportService.new(File.join(@@config[:services]["opentox-validation"],"report")) + rep = Reports::ReportService.new(File.join(CONFIG[:services]["opentox-validation"],"report")) rep.delete_all_reports("validation") rep.create_report("validation",v.validation_uri) -- cgit v1.2.3