From 654711ccecf3829f9ba8501fe67df06fd1aac9cf Mon Sep 17 00:00:00 2001
From: mguetlein <martin.guetlein@gmail.com>
Date: Fri, 27 May 2011 10:09:35 +0200
Subject: remove hack to determine prediction feature

---
 lib/feature_util.rb | 63 -----------------------------------------------------
 lib/predictions.rb  |  2 +-
 2 files changed, 1 insertion(+), 64 deletions(-)
 delete mode 100644 lib/feature_util.rb

(limited to 'lib')

diff --git a/lib/feature_util.rb b/lib/feature_util.rb
deleted file mode 100644
index e412416..0000000
--- a/lib/feature_util.rb
+++ /dev/null
@@ -1,63 +0,0 @@
-
-module Lib
-  class FeatureUtil
-    
-    # this derieves the predicted_variable and predicted_confidence in prediction dataset
-    # predicted_variable: the feature-uri of model predictions
-    # predicted_confidence: the feature-uri of the model prediction confidence
-    # according to API info should be available in the API
-    # problem: IST has no feature-service -> predicted_variable depends on prediction dataset 
-    #
-    # PENDING: ambit and ist declare prediction features differently -> unify
-    #
-    def self.predicted_variables( model, prediction_dataset_uri, subjectid=nil )
-      
-      predicted_variable = nil
-      predicted_confidence = nil
-      
-      if model.metadata[OT.predictedVariables]
-        predictedVariables = model.metadata[OT.predictedVariables]
-        if predictedVariables.is_a?(Array)
-          if (predictedVariables.size==1)
-            predicted_variable = predictedVariables[0]
-          elsif (predictedVariables.size==2)
-            # PENDING identify confidence
-            conf_index = -1
-            predictedVariables.size.times do |i|
-              conf_index = i if OpenTox::Feature.find(predictedVariables[i]).metadata[DC.title]=~/(?i)confidence/
-            end
-            raise "size=2, no confidence "+predictedVariables.inspect+" "+model.uri.to_s if conf_index==-1
-            predicted_variable = predictedVariables[1-conf_index]
-            predicted_confidence = predictedVariables[conf_index]
-          else
-            raise "size>2 "+predictedVariables.inspect+" "+model.uri.to_s  
-          end
-        else
-          raise "predictedVariables is no array"
-        end        
-      end
-      
-      unless predicted_variable
-        d = OpenTox::Dataset.new prediction_dataset_uri
-        d.load_features(subjectid)
-        d.features.keys.each do |f|
-          if d.features[f][OT.hasSource]==model.uri
-            # PENDING identify confidence
-            if f =~ /(?i)confidence/
-              raise "duplicate confidence feature, what to choose?" if predicted_confidence!=nil
-              predicted_confidence = f
-            elsif d.features[f][RDF.type].include? OT.ModelPrediction
-              raise "duplicate predicted variable, what to choose?" if predicted_variable!=nil
-              predicted_variable = f
-            end
-          end
-        end
-        raise "could not estimate predicted variable, model: '"+model.uri.to_s+"', prediction_dataset: '"+
-          prediction_dataset_uri.to_s+"'" unless predicted_variable
-      end
-      
-      {:predicted_variable => predicted_variable, :predicted_confidence => predicted_confidence}
-    end
-  end
-end
-  
diff --git a/lib/predictions.rb b/lib/predictions.rb
index a449776..2409375 100755
--- a/lib/predictions.rb
+++ b/lib/predictions.rb
@@ -36,7 +36,7 @@ module Lib
       #puts "actual:     "+actual_values.inspect
       #puts "confidence: "+confidence_values.inspect
       
-      raise "unknown feature_type: "+@feature_type.to_s unless 
+      raise "unknown feature_type: '"+@feature_type.to_s+"'" unless 
         @feature_type=="classification" || @feature_type=="regression"
       raise "no predictions" if @predicted_values.size == 0
       num_info = "predicted:"+@predicted_values.size.to_s+
-- 
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