ENV['JAVA_HOME'] = "/usr/bin" unless ENV['JAVA_HOME'] ENV['PATH'] = ENV['JAVA_HOME']+":"+ENV['PATH'] unless ENV['PATH'].split(":").index(ENV['JAVA_HOME']) ENV['RANK_PLOTTER_JAR'] = "RankPlotter/RankPlotter.jar" unless ENV['RANK_PLOTTER_JAR'] class Array def swap!(i,j) tmp = self[i] self[i] = self[j] self[j] = tmp end # summing up values of fields where array __groups__ has equal values # EXAMPLE # self: [1, 0, 1, 2, 3, 0, 2] # __groups__: [100, 90, 70, 70, 30, 10, 0] # returns: # [ 1, 0, 3, 3, 0, 2] # (fields with equal value 70 are compressed) # PRECONDITION # __groups__ has to be sorted def compress_sum(groups) compress(groups) do |a,b| a+b end end # see compress_sum, replace sum with max def compress_max(groups) compress(groups) do |a,b| a > b ? a : b end end private def compress(groups) raise "length not equal" unless self.size==groups.size raise "to small" unless self.size>=2 a = [ self[0] ] (1..groups.size-1).each do |i| if groups[i]!=groups[i-1] a << self[i] else a[-1] = yield a[-1],self[i] end end a end end module Reports module PlotFactory def self.create_regression_plot( out_file, validation_set, name_attribute ) LOGGER.debug "Creating regression plot, out-file:"+out_file.to_s names = [] x = [] y = [] validation_set.validations.each do |v| x_i = v.get_predictions.predicted_values y_i = v.get_predictions.actual_values # filter out nil-predictions not_nil_indices = [] x_i.size.times do |i| not_nil_indices << i if x_i[i]!=nil && y_i[i]!=nil end if not_nil_indices.size < x_i.size x_i = not_nil_indices.collect{ |i| x_i[i] } y_i = not_nil_indices.collect{ |i| y_i[i] } end names << ( name_attribute==:crossvalidation_fold ? "fold " : "" ) + v.send(name_attribute).to_s x << x_i y << y_i end RubyPlot::plot_points(out_file, "Regression plot", "Predicted values", "Actual values", names, x, y ) end # creates a roc plot (result is plotted into out_file) # * if (split_set_attributes == nil?) # * the predictions of all validations in the validation set are plotted as one average roc-curve # * if (show_single_curves == true) -> the single predictions of each validation are plotted as well # * if (split_set_attributes != nil?) # * the validation set is splitted into sets of validation_sets with equal attribute values # * each of theses validation sets is plotted as a roc-curve # def self.create_roc_plot( out_file, validation_set, class_value, split_set_attribute=nil, show_single_curves=false ) LOGGER.debug "creating roc plot for '"+validation_set.size.to_s+"' validations, out-file:"+out_file.to_s if split_set_attribute attribute_values = validation_set.get_values(split_set_attribute) names = [] fp_rates = [] tp_rates = [] attribute_values.each do |value| begin data = transform_predictions(validation_set.filter({split_set_attribute => value}), class_value, false) names << value.to_s fp_rates << data[:fp_rate][0] tp_rates << data[:tp_rate][0] rescue LOGGER.warn "could not create ROC plot for "+value.to_s end end RubyPlot::plot_lines(out_file, "ROC-Plot", "False positive rate", "True Positive Rate", names, fp_rates, tp_rates ) else data = transform_predictions(validation_set, class_value, show_single_curves) RubyPlot::plot_lines(out_file, "ROC-Plot", "False positive rate", "True Positive Rate", data[:names], data[:fp_rate], data[:tp_rate], data[:faint] ) end end def self.create_bar_plot( out_file, validation_set, title_attribute, value_attributes ) LOGGER.debug "creating bar plot, out-file:"+out_file.to_s data = [] titles = [] labels = [] validation_set.validations.each do |v| values = [] value_attributes.each do |a| validation_set.get_domain_for_attr(a).each do |class_value| value = v.send(a) if value.is_a?(Hash) if class_value==nil avg_value = 0 value.values.each{ |val| avg_value+=val } value = avg_value/value.values.size.to_f else raise "bar plot value is hash, but no entry for class-value ("+class_value.to_s+"); value for "+a.to_s+" -> "+value.inspect unless value.key?(class_value) value = value[class_value] end end raise "value is nil\nattribute: "+a.to_s+"\nvalidation: "+v.inspect if value==nil values.push(value) labels.push(a.to_s.gsub("_","-") + ( class_value==nil ? "" : "("+class_value.to_s+")" )) end end titles << v.send(title_attribute).to_s data << values end titles = titles.remove_common_prefix (0..titles.size-1).each do |i| data[i] = [titles[i]] + data[i] end LOGGER.debug "bar plot labels: "+labels.inspect LOGGER.debug "bar plot data: "+data.inspect RubyPlot::plot_bars('Bar plot', labels, data, out_file) end def self.create_ranking_plot( svg_out_file, validation_set, compare_attribute, equal_attribute, rank_attribute, class_value=nil ) #compute ranks #puts "rank attibute is "+rank_attribute.to_s rank_set = validation_set.compute_ranking([equal_attribute],rank_attribute,class_value) #puts compare_attribute #puts rank_set.to_array([:algorithm_uri, :dataset_uri, :percent_correct, :percent_correct_ranking]).collect{|a| a.inspect}.join("\n") #puts "\n" #compute avg ranks merge_set = rank_set.merge([compare_attribute]) #puts merge_set.to_array([:algorithm_uri, :dataset_uri, :percent_correct, :percent_correct_ranking]).collect{|a| a.inspect}.join("\n") comparables = merge_set.get_values(compare_attribute) ranks = merge_set.get_values((rank_attribute.to_s+"_ranking").to_sym,false) plot_ranking( rank_attribute.to_s+" ranking", comparables, ranks, nil, #0.1, validation_set.num_different_values(equal_attribute), svg_out_file) end protected def self.plot_ranking( title, comparables_array, ranks_array, confidence = nil, numdatasets = nil, svg_out_file = nil ) (confidence and numdatasets) ? conf = "-q "+confidence.to_s+" -k "+numdatasets.to_s : conf = "" svg_out_file ? show = "-o" : show = "" (title and title.length > 0) ? tit = '-t "'+title+'"' : tit = "" #title = "-t \""+ranking_value_prop+"-Ranking ("+comparables.size.to_s+" "+comparable_prop+"s, "+num_groups.to_s+" "+ranking_group_prop+"s, p < "+p.to_s+")\" " cmd = "java -jar "+ENV['RANK_PLOTTER_JAR']+" "+tit+" -c '"+ comparables_array.join(",")+"' -r '"+ranks_array.join(",")+"' "+conf+" "+show #+" > /home/martin/tmp/test.svg" #puts "\nplotting: "+cmd LOGGER.debug "Plotting ranks: "+cmd.to_s res = "" IO.popen(cmd) do |f| while line = f.gets do res += line end end raise "rank plot failed" unless $?==0 if svg_out_file f = File.new(svg_out_file, "w") f.puts res end svg_out_file ? svg_out_file : res end def self.demo_ranking_plot puts plot_ranking( nil, ["naive bayes", "svm", "decision tree"], [1.9, 3, 1.5], 0.1, 50) #, "/home/martin/tmp/test.svg") end private def self.transform_predictions(validation_set, class_value, add_single_folds=false) if (validation_set.size > 1) names = []; fp_rate = []; tp_rate = []; faint = [] sum_roc_values = { :predicted_values => [], :actual_values => [], :confidence_values => []} (0..validation_set.size-1).each do |i| roc_values = validation_set.get(i).get_predictions.get_roc_values(class_value) sum_roc_values[:predicted_values] += roc_values[:predicted_values] sum_roc_values[:confidence_values] += roc_values[:confidence_values] sum_roc_values[:actual_values] += roc_values[:actual_values] if add_single_folds begin tp_fp_rates = get_tp_fp_rates(roc_values) names << "fold "+i.to_s fp_rate << tp_fp_rates[:fp_rate] tp_rate << tp_fp_rates[:tp_rate] faint << true rescue LOGGER.warn "could not get ROC vals for fold "+i.to_s end end end tp_fp_rates = get_tp_fp_rates(sum_roc_values) names << nil # "all" fp_rate << tp_fp_rates[:fp_rate] tp_rate << tp_fp_rates[:tp_rate] faint << false return { :names => names, :fp_rate => fp_rate, :tp_rate => tp_rate, :faint => faint } else roc_values = validation_set.validations[0].get_predictions.get_roc_values(class_value) tp_fp_rates = get_tp_fp_rates(roc_values) return { :names => ["default"], :fp_rate => [tp_fp_rates[:fp_rate]], :tp_rate => [tp_fp_rates[:tp_rate]] } end end def self.demo_rock_plot roc_values = {:confidence_values => [0.1, 0.9, 0.5, 0.6, 0.6, 0.6], :predicted_values => [1, 0, 0, 1, 0, 1], :actual_values => [0, 1, 0, 0, 1, 1]} tp_fp_rates = get_tp_fp_rates(roc_values) data = { :names => ["default"], :fp_rate => [tp_fp_rates[:fp_rate]], :tp_rate => [tp_fp_rates[:tp_rate]] } RubyPlot::plot_lines("/tmp/plot.svg", "ROC-Plot", "False positive rate", "True Positive Rate", data[:names], data[:fp_rate], data[:tp_rate], data[:faint] ) end def self.get_tp_fp_rates(roc_values) c = roc_values[:confidence_values] p = roc_values[:predicted_values] a = roc_values[:actual_values] raise "no prediction values for roc-plot" if p.size==0 # hack for painting perfect/worst roc curve, otherwhise fp/tp-rate will always be 100% # determine if perfect/worst roc curve fp_found = false tp_found = false (0..p.size-1).each do |i| if a[i]!=p[i] fp_found |= true else tp_found |=true end break if tp_found and fp_found end unless fp_found and tp_found #if perfect/worst add wrong/right instance with lowest confidence a << (tp_found ? 0 : 1) p << 1 c << -Float::MAX end (0..p.size-2).each do |i| ((i+1)..p.size-1).each do |j| if c[i]0 ? tp_rate[i]/tp_rate[-1].to_f*100 : 100 fp_rate[i] = fp_rate[-1]>0 ? fp_rate[i]/fp_rate[-1].to_f*100 : 100 end #puts tp_rate.inspect+"\n"+fp_rate.inspect+"\n\n" return {:tp_rate => tp_rate,:fp_rate => fp_rate} end end end #require "rubygems" #require "ruby-plot" #Reports::PlotFactory::demo_ranking_plot #Reports::PlotFactory::demo_rock_plot #a = [1, 0, 1, 2, 3, 0, 2] #puts a.compress_sum([100, 90, 70, 70, 30, 10, 0]).inspect #puts a.compress_max([100, 90, 70, 70, 30, 10, 0]).inspect