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require "uri"
require "yaml"
ENV['RACK_ENV'] = 'test'
require 'application.rb'
require 'test/unit'
require 'rack/test'
require 'lib/test_util.rb'
require 'test/test_examples.rb'
LOGGER = MyLogger.new(STDOUT)
LOGGER.datetime_format = "%Y-%m-%d %H:%M:%S "
LOGGER.formatter = Logger::Formatter.new
#Rack::Test::DEFAULT_HOST = "localhost" #"/validation"
module Sinatra
module UrlForHelper
BASE = "http://localhost/validation"
def url_for url_fragment, mode=:path_only
case mode
when :path_only
raise "not impl"
when :full
end
"#{BASE}#{url_fragment}"
end
end
end
class ValidationTest < Test::Unit::TestCase
include Rack::Test::Methods
include Lib::TestUtil
def test_it
$test_case = self
#get "/1",nil,'HTTP_ACCEPT' => "text/html"
# get "/",nil,'HTTP_ACCEPT' => "text/html"
#puts last_response.body
# d = OpenTox::Dataset.find("http://ot-dev.in-silico.ch/dataset/307")
# puts d.compounds.inspect
# exit
#get "?model=http://localhost/model/1"
# get "/crossvalidation/3/predictions"
# puts last_response.body
# post "/validate_datasets",{
# :test_dataset_uri=>"http://apps.deaconsult.net:8080/ambit2/dataset/R3924",
# :prediction_dataset_uri=>"http://apps.ideaconsult.net:8080/ambit2/dataset/R3924?feature_uris[]=http%3A%2F%2Fapps.ideaconsult.net%3A8080%2Fambit2%2Fmodel%2F52%2Fpredicted",
# #:test_target_dataset_uri=>"http://localhost/dataset/202",
# :prediction_feature=>"http://apps.ideaconsult.net:8080/ambit2/feature/21715",
# :predicted_feature=>"http://apps.ideaconsult.net:8080/ambit2/feature/28944",
# :regression=>"true"}
# #:classification=>"true"}
# puts last_response.body
#post "/crossvalidation/cleanup"
#puts last_response.body
#get "/crossvalidation/4/statistics"
# post "",:model_uri=>"http://localhost/model/1",:test_dataset_uri=>"http://localhost/dataset/3",
# :test_target_dataset_uri=>"http://localhost/dataset/1"
# get "/crossvalidation/2",nil,'HTTP_ACCEPT' => "application/rdf+xml"
#puts last_response.body
#get "/crossvalidation?model_uri=lazar"
# post "/test_validation",:select=>"6d" #,:report=>"yes,please"
#puts last_response.body
# post "/validate_datasets",{
# :test_dataset_uri=>"http://localhost/dataset/204",
# :prediction_dataset_uri=>"http://localhost/dataset/206",
# :test_target_dataset_uri=>"http://localhost/dataset/202",
# :prediction_feature=>"http://ot-dev.in-silico.ch/toxcreate/feature#IRIS%20unit%20risk",
# :predicted_feature=>"http://ot-dev.in-silico.ch/toxcreate/feature#IRIS%20unit%20risk_lazar_regression",
# :regression=>"true"}
# #:classification=>"true"}
# puts last_response.body
#run_test("1b","http://localhost/validation/28")#,"http://localhost/validation/394");
#run_test("7b","http://localhost/validation/21")
#run_test("3a","http://localhost/validation/crossvalidation/4")
#run_test("3b","http://localhost/validation/crossvalidation/3")
#run_test("8a", "http://localhost/validation/crossvalidation/6")
#run_test("8b", "http://localhost/validation/crossvalidation/5")
#run_test("11b", "http://localhost/validation/crossvalidation/2" )# //localhost/validation/42")#, "http://localhost/validation/report/validation/8") #,"http://localhost/validation/report/validation/36") #, "http://localhost/validation/321")
# run_test("7a","http://localhost/validation/40") #,"http://localhost/validation/crossvalidation/10") #, "http://localhost/validation/321")
#run_test("8b", "http://localhost/validation/crossvalidation/4")
#puts Nightly.build_nightly("1")
prepare_examples
#do_test_examples # USES CURL, DO NOT FORGET TO RESTART VALIDATION SERVICE
#do_test_examples_ortona
end
def app
Sinatra::Application
end
def run_test(select=nil, validation_uri=nil, report_uri=nil)
puts ValidationExamples.list unless select
validationExamples = ValidationExamples.select(select)
validationExamples.each do |vv|
vv.each do |v|
ex = v.new
ex.validation_uri = validation_uri
unless ex.validation_uri
ex.upload_files
ex.check_requirements
ex.validate
LOGGER.debug "validation done '"+ex.validation_uri.to_s+"'"
end
ex.report_uri = report_uri
unless ex.report_uri
ex.report
end
ex.verify_yaml
ex.compare_yaml_vs_rdf
end
end
end
def prepare_examples
get '/prepare_examples'
end
def do_test_examples # USES CURL, DO NOT FORGET TO RESTART
post '/test_examples'
end
def do_test_examples_ortona
post '/test_examples',:examples=>"http://ortona.informatik.uni-freiburg.de/validation/examples"
end
end
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