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OpenTox Datasets
=================
* An OpenTox REST Webservice
* Stores associations between compounds and features in datasets
* Implements a subset of the OpenTox dataset API (http://opentox.org/wiki/opentox/Dataset).
* Current version runs at http://webservices.in-silico.ch/dataset/v0
REST API
Description Method URI Parameters Result Status codes
Get a list of all GET / List of URIs 200, 500
datasets
Get a YAML representation GET /{id} YAML representation 200, 404, 500
of a dataset of a dataset
Get the dataset name GET /{id}/name Dataset name 200, 404, 500
Get all compound URIs GET /{id}/compounds List of compound 200, 404, 500
from a dataset URIs
Get all feature URIs GET /{id}/features List of features 200, 404, 500
Get all features with GET /{id}/features/compounds YAML with features 200, 404, 500
corresponding compounds and compounds
Get all compounds and GET /{id}/compounds/features YAML with compounds 200, 404, 500
their features and featues
Get all features for a GET /{id}/compound/ List of feature URIs 200, 404, 500
compound URI {compound_uri}/features
Get all features for a GET /{id}/feature/ List of compound URIs 200, 404, 500
feature URI {feature_uri}/compounds
Create a new dataset POST / name Dataset URI 200, 500
Create a new dataset POST / name, file Dataset URI 200, 500
from a csv file
Add a new association to POST /{id} compound_uri, Dataset URI 200, 404, 500
a dataset feature_uri
Delete a dataset DELETE /{id} 200, 404, 500
EXAMPLES
Create a dataset from a csv file:
curl -X POST -F name="Hamster carcinogenicity" -F file=@hamster_carcinogenicity.csv http://webservices.in-silico.ch/dataset/v0/
returns a {dataset_uri}
Show a list of all compounds:
curl {dataset_uri}/compounds
Show a list of all features:
curl {dataset_uri}/features
Show all compounds and their features:
curl {dataset_uri}/compounds/features
INSTALLATION
Run 'rake install' to install the required gems
Copyright (c) 2009 Christoph Helma. See LICENSE for details.
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