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post '/*/import/?' do
find
halt 404, "Compound format #{params[:compound_format]} not (yet) supported" unless params[:compound_format] =~ /smiles|inchi|name/
task = OpenTox::Task.create(@set.uri)
Spork.spork do
@compounds_set = Dataset.find File.join(@set.uri, "compounds")
@features_set = Dataset.find File.join(@set.uri, "features")
case params[:file][:type]
when "text/csv"
task.start
File.open(params[:file][:tempfile].path).each_line do |line|
record = line.chomp.split(/,\s*/)
compound_uri = OpenTox::Compound.new(:smiles => record[0]).uri
feature_uri = OpenTox::Feature.new(:name => @set.name, :values => {:classification => record[1]}).uri
@compounds_set.add compound_uri #unless @compounds_set.member? compound_uri
@features_set.add feature_uri #unless @features_set.member? feature_uri
# key: /dataset/:dataset/compound/:inchi
@compound_features = Dataset.find_or_create File.join(@set.uri,'compound',OpenTox::Compound.new(:uri => compound_uri).inchi)
@compound_features.add feature_uri
end
task.completed
else
halt 404, "File format #{request.content_type} not (yet) supported"
end
end
task.uri
end
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