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Install System with opentox/install branch pc_new_1
cd ~/opentox-ruby/www/opentox/
for d in `find -maxdepth 1 -type d`; do echo ; echo $d; cd $d; git fetch ; git status ; cd -; done
for d in `find -maxdepth 1 -type d`; do echo ; echo $d; cd $d; git checkout pc_new_1 ; git status ; cd -; done
Check commits:
for d in `find -maxdepth 1 -type d`; do echo ; echo $d; cd $d; git status ; cd - ; cd $d/.git/ ; cat ORIG_HEAD ; cd - ; done
Select correct one with "git reset --hard HEAD(e.g. ("d09179be7f08c341b871b2b17e7c105bf1548f1d")"
Check R packages:
for d in `find -maxdepth 1 -type d`; do echo ; echo $d; cd $d; cat DESCRIPTION | grep Version ; cd -; done
If "gem list" shows different versions for "rack", uninstall all but "1.3.5" with "gem uninstall rack" -> choose wrong version.
cd ~/opentox-ruby/www/opentox/opentox-ruby/
otconfig
rake install
otstart
-------------------------------------------------------------------------
ot6@toxcreate3:~/opentox-ruby/www/opentox$ for d in `find -maxdepth 1 -type d`; do echo ; echo $d; cd $d; git status ; cd - ; cd $d/.git/ ; cat ORIG_HEAD ; cd - ; done
.
fatal: Not a git repository (or any of the parent directories): .git
/home/ot6/opentox-ruby/www/opentox
-bash: cd: ./.git/: No such file or directory
cat: ORIG_HEAD: No such file or directory
/home/ot6/opentox-ruby/www/opentox
./model
# On branch pc_new_1
nothing to commit (working directory clean)
/home/ot6/opentox-ruby/www/opentox
d09179be7f08c341b871b2b17e7c105bf1548f1d
/home/ot6/opentox-ruby/www/opentox
./opentox-ruby
# On branch pc_new_1
nothing to commit (working directory clean)
/home/ot6/opentox-ruby/www/opentox
c4d79f636827def2b6ac288275570ecfc7187bf1
/home/ot6/opentox-ruby/www/opentox
./task
# On branch development
nothing to commit (working directory clean)
/home/ot6/opentox-ruby/www/opentox
4059b9ca4f768db6a1dece477b7d49be2e68d1dc
/home/ot6/opentox-ruby/www/opentox
./algorithm
# On branch pc_new_1
# Changed but not updated:
# (use "git add <file>..." to update what will be committed)
# (use "git checkout -- <file>..." to discard changes in working directory)
# (commit or discard the untracked or modified content in submodules)
#
# modified: libfminer (new commits, modified content, untracked content)
#
# Untracked files:
# (use "git add <file>..." to include in what will be committed)
#
# fminer_debug.txt
no changes added to commit (use "git add" and/or "git commit -a")
/home/ot6/opentox-ruby/www/opentox
49eb76b0f2c2037e4a1e664752271b7e4a955f72
/home/ot6/opentox-ruby/www/opentox
./validation
# On branch development
nothing to commit (working directory clean)
/home/ot6/opentox-ruby/www/opentox
63320057e2a2b2121c5c405c31e2e7b709fa9e44 / 8a199a09a6d9ac8b0349af0d7c5b5320bdcec9b5
/home/ot6/opentox-ruby/www/opentox
./compound
# On branch development
nothing to commit (working directory clean)
/home/ot6/opentox-ruby/www/opentox
334568e596442d13e884dcabda3b1769bdfd898c
/home/ot6/opentox-ruby/www/opentox
./dataset
# On branch development
nothing to commit (working directory clean)
/home/ot6/opentox-ruby/www/opentox
e145f4add589228ee9b2aa5500396035668b5085
/home/ot6/opentox-ruby/www/opentox
./toxcreate
# On branch development
nothing to commit (working directory clean)
/home/ot6/opentox-ruby/www/opentox
2860c89ea31dc81e2493acbbc735361f9fd00c2d
/home/ot6/opentox-ruby/www/opentox
-------------------------------------------------------------------------
ot6@toxcreate3:~/opentox-ruby/r-packages$ for d in `find -maxdepth 1 -type d`; do echo ; echo $d; cd $d; cat DESCRIPTION | grep Version ; cd -; done
.
cat: DESCRIPTION: No such file or directory
/home/ot6/opentox-ruby/r-packages
./iterators
Version: 1.0.5
/home/ot6/opentox-ruby/r-packages
./sampling
Version: 2.5
/home/ot6/opentox-ruby/r-packages
./lpSolve
Version: 5.6.6
/home/ot6/opentox-ruby/r-packages
./foreach
Version: 1.3.5
/home/ot6/opentox-ruby/r-packages
./reshape
Version: 0.8.4
/home/ot6/opentox-ruby/r-packages
./multicore
Version: 0.1-7
/home/ot6/opentox-ruby/r-packages
./vegan
Version: 2.0-3
/home/ot6/opentox-ruby/r-packages
./e1071
Version: 1.6
/home/ot6/opentox-ruby/r-packages
./caret
Version: 5.15-023
/home/ot6/opentox-ruby/r-packages
./doMC
Version: 1.2.4
/home/ot6/opentox-ruby/r-packages
./plyr
Version: 1.7.1
/home/ot6/opentox-ruby/r-packages
./gam
Version: 1.06.2
/home/ot6/opentox-ruby/r-packages
./permute
Version: 0.6-3
/home/ot6/opentox-ruby/r-packages
./kernlab
Version: 0.9-14
/home/ot6/opentox-ruby/r-packages
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