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authorChristoph Helma <helma@in-silico.ch>2010-08-25 12:27:45 +0200
committerChristoph Helma <helma@in-silico.ch>2010-08-25 12:27:45 +0200
commit0490f0c5b94c36454c66b2c385f6d017aa1c3fc0 (patch)
tree06457f42a57ce079bcf363aecf5899215a453e5c /README
parent031624c162731b133b7eabf78937af2f6195275b (diff)
initial version for quantitative features
Diffstat (limited to 'README')
-rw-r--r--README6
1 files changed, 3 insertions, 3 deletions
diff --git a/README b/README
index b4e1eee..5182758 100644
--- a/README
+++ b/README
@@ -16,7 +16,7 @@ lazar algorithm
Create fminer features POST /fminer dataset_uri, URI for feature dataset 200,400,404,500
feature_uri
Create lazar model POST /lazar dataset_uri, URI for lazar model 200,400,404,500
- feature_uri,
+ prediction_feature,
feature_generation_uri
Supported MIME formats (http://chemical-mime.sourceforge.net/):
@@ -32,13 +32,13 @@ Get the OWL-DL representation of lazar
curl http://webservices.in-silico.ch/algorithm/lazar
Create fminer features
- curl -X POST -d dataset_uri={datset_uri} -d feature_uri={feature_uri} http://webservices.in-silico.ch/algorithm/fminer
+ curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} http://webservices.in-silico.ch/algorithm/fminer
(feaure_uri specifies the dependent variable, e.g. http://www.epa.gov/NCCT/dsstox/CentralFieldDef.html#ActivityOutcome_CPDBAS_Hamster)
Creates a dataset with fminer features (backbone refinement class representatives from supervised graph mining, see http://www.maunz.de/libfminer-doc/). These features can be used e.g. as structural alerts, as descriptors (fingerprints) for prediction models or for similarity calculations.
Create lazar model
- curl -X POST -d dataset_uri={datset_uri} -d feature_uri={feature_uri} -d feature_generation_uri=http://webservices.in-silico.ch/algorithm/fminer http://webservices.in-silico.ch/test/algorithm/lazar
+ curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d feature_generation_uri=http://webservices.in-silico.ch/algorithm/fminer http://webservices.in-silico.ch/test/algorithm/lazar
(feaure_uri specifies the dependent variable, e.g. http://www.epa.gov/NCCT/dsstox/CentralFieldDef.html#ActivityOutcome_CPDBAS_Hamster)
More documentation: Source code (application.rb, fminer.rb, lazar.rb)