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Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 53 |
1 files changed, 33 insertions, 20 deletions
@@ -1,7 +1,7 @@ OpenTox Algorithm ================= -- An [OpenTox](http://www.opentox.org) REST Webservice +- An [OpenTox](http://www.opentox.org) REST Webservice - Implements the OpenTox algorithm API for - fminer - lazar @@ -9,18 +9,26 @@ OpenTox Algorithm REST operations --------------- - Get a list of all algorithms GET / - URIs of algorithms 200 - Get a representation of the GET /fminer - fminer representation 200,404 - fminer algorithm - Get a representation of the GET /lazar - lazar representation 200,404 - lazar algorithm - Create fminer features POST /fminer dataset_uri, URI for feature dataset 200,400,404,500 - feature_uri - Create lazar model POST /lazar dataset_uri, URI for lazar model 200,400,404,500 - prediction_feature, - feature_generation_uri - -Supported MIME formats + Get a list of all algorithms GET / - URIs of algorithms 200 + Get a representation of the GET /fminer/ - fminer representation 200,404 + fminer algorithms + Get a representation of the GET /fminer/bbrc - bbrc representation 200,404 + bbrc algorithm + Get a representation of the GET /fminer/last - last representation 200,404 + last algorithm + Get a representation of the GET /lazar - lazar representation 200,404 + lazar algorithm + Create bbrc features POST /fminer/bbrc dataset_uri, URI for feature dataset 200,400,404,500 + feature_uri, + min_frequency + Create last features POST /fminer/last dataset_uri, URI for feature dataset 200,400,404,500 + feature_uri, + min_frequency + Create lazar model POST /lazar dataset_uri, URI for lazar model 200,400,404,500 + prediction_feature, + feature_generation_uri + +Supported MIME formats ---------------------- - application/rdf+xml (default): read/write OWL-DL @@ -29,19 +37,25 @@ Supported MIME formats Examples -------- -### Get the OWL-DL representation of fminer +### Get the OWL-DL representation of fminer curl http://webservices.in-silico.ch/algorithm/fminer -### Get the OWL-DL representation of lazar +### Get the OWL-DL representation of lazar curl http://webservices.in-silico.ch/algorithm/lazar -### Create fminer features +### Create [BBRC](http://bbrc.maunz.de) features - curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} http://webservices.in-silico.ch/algorithm/fminer + curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} http://webservices.in-silico.ch/algorithm/fminer/bbrc -(feature_uri specifies the dependent variable, e.g. http://www.epa.gov/NCCT/dsstox/CentralFieldDef.html#ActivityOutcome_CPDBAS_Hamster) +feature_uri specifies the dependent variable from the dataset. + +### Create [LAST-PM](http://last-pm.maunz.de) features + + curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d min_frequency={min_frequency} http://webservices.in-silico.ch/algorithm/fminer/last + +feature_uri specifies the dependent variable from the dataset. Creates a dataset with fminer features (backbone refinement class representatives from supervised graph mining, see http://www.maunz.de/libfminer-doc/). These features can be used e.g. as structural alerts, as descriptors (fingerprints) for prediction models or for similarity calculations. @@ -49,10 +63,9 @@ Creates a dataset with fminer features (backbone refinement class representative curl -X POST -d dataset_uri={datset_uri} -d prediction_feature={feature_uri} -d feature_generation_uri=http://webservices.in-silico.ch/algorithm/fminer http://webservices.in-silico.ch/test/algorithm/lazar -(feaure_uri specifies the dependent variable, e.g. http://www.epa.gov/NCCT/dsstox/CentralFieldDef.html#ActivityOutcome_CPDBAS_Hamster) +feature_uri specifies the dependent variable from the dataset [API documentation](http://rdoc.info/github/opentox/algorithm) -------------------------------------------------------------- Copyright (c) 2009-2011 Christoph Helma, Martin Guetlein, Micha Rautenberg, Andreas Maunz, David Vorgrimmler, Denis Gebele. See LICENSE for details. - |