diff options
Diffstat (limited to 'algorithm_test.rb')
| -rw-r--r-- | algorithm_test.rb | 34 |
1 files changed, 27 insertions, 7 deletions
diff --git a/algorithm_test.rb b/algorithm_test.rb index 428ed2b..ab9e7f2 100644 --- a/algorithm_test.rb +++ b/algorithm_test.rb @@ -53,23 +53,43 @@ class AlgorithmTest < Test::Unit::TestCase ##dataset_uri = "http://local-ot/dataset/1488" #prediction_feature = "http://local-ot/dataset/1315/feature/Rodent%20carcinogenicity" - #kazius 250 no features - dataset_uri = "http://local-ot/dataset/9264" - prediction_feature = dataset_uri+"/feature/endpoint" - feature_dataset_uri = "http://local-ot/dataset/91409" + #EPAFHM 580compounds no features + #dataset_uri = "http://local-ot/dataset/119310" + #prediction_feature = "http://local-ot/dataset/119310/feature/LC50_mmol_LOG" + + ##kazius 250 no features + #dataset_uri = "http://local-ot/dataset/12086" + #prediction_feature = dataset_uri+"/feature/endpoint" + #feature_dataset_uri = "http://local-ot/dataset/91409" + + dataset_uri = "http://virtual4:8004/dataset/200615" + prediction_feature = "http://virtual4:8004/dataset/3/feature/Outcome" params = {:dataset_uri=>dataset_uri, :prediction_feature=>prediction_feature, - :min_frequency=>7, :max_num_features=>300} #multi: 10=>4, 5=>>3000 + :min_frequency=>24, :max_num_features=>1000} #multi: 10=>4, 5=>>3000 + + post "/fminer/bbrc",params + uri = wait_for_task(last_response.body) + puts uri + exit + + #uri = "http://local-ot/dataset/12117" + uri = "http://local-ot/dataset/12086" + d = OpenTox::Dataset.find(uri) + r = OpenTox::RUtil.new() + puts r.dataset_to_dataframe(d,"0") + r.quit_r + + exit # params = {:dataset_uri=>dataset_uri, # :prediction_feature=>prediction_feature, :feature_dataset_uri=>feature_dataset_uri} # post "/lazar",params #post "/fminer/bbrc",params - #uri = wait_for_task(last_response.body) - #puts uri + #puts OpenTox::RestClientWrapper.post(File.join(CONFIG[:services]["opentox-algorithm"],"fminer/bbrc"),params) |