diff options
Diffstat (limited to 'fminer.rb')
| -rw-r--r-- | fminer.rb | 5 |
1 files changed, 1 insertions, 4 deletions
@@ -359,7 +359,7 @@ post '/fminer/bbrc/sample/?' do @r.assign "dataset.service", CONFIG[:services]["opentox-dataset"] @r.eval "source(\"bbrc-sample/bbrc-sample.R\")" - @r.eval "bootBbrc(dataset.uri, prediction.feature.uri, num.boots, min.frequency.per.sample, min.sampling.support, NULL, bbrc.service, dataset.service, F)" + @r.eval "bootBbrc(dataset.uri, prediction.feature.uri, num.boots, min.frequency.per.sample, min.sampling.support, NULL, bbrc.service, dataset.service, T)" smarts = (@r.pull "ans.patterns").collect! { |id| id.gsub(/\'/,"") } # remove extra quotes around smarts r_p_values = @r.pull "ans.p.values" @@ -369,9 +369,6 @@ post '/fminer/bbrc/sample/?' do lu = LU.new # AM LAST: uses last-utils here params[:nr_hits] == "true" ? hit_count=true: hit_count=false - - LOGGER.debug fminer.smi.to_yaml - LOGGER.debug smarts.to_yaml matches, counts = lu.match_rb(fminer.smi,smarts,hit_count) # AM LAST: creates instantiations matches.each do |smarts, ids| |