diff options
Diffstat (limited to 'import.rb')
| -rw-r--r-- | import.rb | 27 |
1 files changed, 0 insertions, 27 deletions
diff --git a/import.rb b/import.rb deleted file mode 100644 index 81b9dcb..0000000 --- a/import.rb +++ /dev/null @@ -1,27 +0,0 @@ -post '/*/import/?' do - find - halt 404, "Compound format #{params[:compound_format]} not (yet) supported" unless params[:compound_format] =~ /smiles|inchi|name/ - task = OpenTox::Task.create(@set.uri) - Spork.spork do - @compounds_set = Dataset.find File.join(@set.uri, "compounds") - @features_set = Dataset.find File.join(@set.uri, "features") - case params[:file][:type] - when "text/csv" - task.start - File.open(params[:file][:tempfile].path).each_line do |line| - record = line.chomp.split(/,\s*/) - compound_uri = OpenTox::Compound.new(:smiles => record[0]).uri - feature_uri = OpenTox::Feature.new(:name => @set.name, :values => {:classification => record[1]}).uri - @compounds_set.add compound_uri #unless @compounds_set.member? compound_uri - @features_set.add feature_uri #unless @features_set.member? feature_uri - # key: /dataset/:dataset/compound/:inchi - @compound_features = Dataset.find_or_create File.join(@set.uri,'compound',OpenTox::Compound.new(:uri => compound_uri).inchi) - @compound_features.add feature_uri - end - task.completed - else - halt 404, "File format #{request.content_type} not (yet) supported" - end - end - task.uri -end |