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author | Christoph Helma <helma@in-silico.ch> | 2020-09-11 23:40:47 +0200 |
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committer | Christoph Helma <helma@in-silico.ch> | 2020-09-11 23:40:47 +0200 |
commit | 2813d3c1688e6a178fe814d32bfd5d6a8613f39f (patch) | |
tree | 097dd3baeed828eadedd7c27cc4f015d2c4274fc /public/presentations/opentox-dublin/api.html | |
parent | 2ffe413a714deb1d02591d1ee4b8d2127915e3a5 (diff) |
static, single page
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-rw-r--r-- | public/presentations/opentox-dublin/api.html | 512 |
1 files changed, 0 insertions, 512 deletions
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src="ui/small-white/slides.js" type="text/javascript"></script> -<link rel="stylesheet" href="ui/small-white/slides.css" - type="text/css" media="projection" id="slideProj" /> -<link rel="stylesheet" href="ui/small-white/outline.css" - type="text/css" media="screen" id="outlineStyle" /> -<link rel="stylesheet" href="ui/small-white/print.css" - type="text/css" media="print" id="slidePrint" /> -<link rel="stylesheet" href="ui/small-white/opera.css" - type="text/css" media="projection" id="operaFix" /> - -<style type="text/css"> -#currentSlide {display: none;} -</style> -</head> -<body> -<div class="layout"> -<div id="controls"></div> -<div id="currentSlide"></div> -<div id="header"> - -</div> -<div id="footer"> -<h1>OpenTox API Working Group</h1> - -</div> -</div> -<div class="presentation"> -<div class="slide" id="slide0"> -<h1 class="title">OpenTox API Working Group</h1> - -<!-- :Date: 30 September 2015 --> -<!-- University College Dublin, Dublin, Ireland --> -<!-- https://docs.google.com/document/d/153ip9ll_pzqMphoJ4d608ujd5GuYysZcTDAODsrXsrc/edit --> - -</div> -<div class="slide" id="workshop-objectives"> -<h1>Workshop Objectives</h1> -<dl class="docutils"> -<dt>Capture</dt> -<dd><ul class="first last simple"> -<li>service provider (developer) experiences</li> -<li>service consumer (client) experiences</li> -</ul> -</dd> -</dl> -<p>Identify open issues</p> -<p>Resolve open issues</p> -<p>Unify and update API documentation</p> -</div> -<div class="slide" id="opentox"> -<h1>OpenTox</h1> -<p><a class="reference external" href="http://opentox.org/dev/apis/api-1.2">http://opentox.org/dev/apis/api-1.2</a></p> -<p>Focus on predictive toxicology</p> -<p>REST interfaces for: Compound, Feature, Dataset, Algorithm, Model, Validation, Report, Ontology, Task, Authentication and Authorisation</p> -<p>RDF representation</p> -</div> -<div class="slide" id="toxbank"> -<h1>ToxBank</h1> -<p><a class="reference external" href="http://api.toxbank.net">http://api.toxbank.net</a></p> -<p>Extensions for capturing bioassay data</p> -<p>Additional objects: Alert, Data, Index, Investigation, Organisation, Project, Protocol, Search, Session, Template, User.</p> -<p>RDF representation, ISA-Tab (<a class="reference external" href="http://isatab.sourceforge.net/format.html">http://isatab.sourceforge.net/format.html</a>)</p> -</div> -<div class="slide" id="enanomapper"> -<h1>eNanoMapper</h1> -<p>IDEA: <a class="reference external" href="http://enanomapper.github.io/API">http://enanomapper.github.io/API</a></p> -<p>NTUA: <a class="reference external" href="http://app.jaqpot.org:8080/jaqpot/swagger">http://app.jaqpot.org:8080/jaqpot/swagger</a></p> -<p>IST: <a class="reference external" href="https://enm.in-silico.ch/api/dist">https://enm.in-silico.ch/api/dist</a></p> -<p>Extensions for capturing nanomaterial data</p> -<p>Additional objects: Bundle, Myaccount, Property, Query, Substance, Substanceowner, Pmml, Bibtex</p> -<p>JSON representation</p> -</div> -<div class="slide" id="developer-experiences"> -<h1>Developer experiences</h1> -</div> -<div class="slide" id="de-serialisation-of-large-datasets-investigations"> -<h1>(De)Serialisation of large datasets/investigations</h1> -<blockquote> -<ul class="simple"> -<li>system/infrastructure limitations (time, memory, database/webserver size limits, ...)</li> -<li>impossible for RDF (performance of RDF parsers/serializers, markup size)</li> -<li>even JSON markup can cause problems</li> -<li>we propose CSV/TSV as data exchange format for datasets</li> -</ul> -</blockquote> -</div> -<div class="slide" id="complexity-of-the-one-webservice-class-model"> -<h1>Complexity of the one webservice/class model</h1> -<blockquote> -<ul class="simple"> -<li>code separation, maintenance</li> -<li>performance penalties caused by suboptimal data structures</li> -<li>performance penalties of webservices (data (de)serialisation)</li> -<li>complicated server infrastructure</li> -</ul> -</blockquote> -</div> -<div class="slide" id="communication-with-external-services"> -<h1>Communication with external services</h1> -<blockquote> -<ul class="simple"> -<li>ad hoc requests for features that deviate from official API</li> -<li>reliablity/availability of external services</li> -<li>undocumented API details</li> -<li>undocumented/silent API/data format changes</li> -<li>no common strategy for conflict resolution, API or data representation updates</li> -</ul> -</blockquote> -</div> -<div class="slide" id="local-service-deployment-e-g-for-in-house-services"> -<h1>Local service deployment (e.g. for in house services)</h1> -<blockquote> -<ul class="simple"> -<li>installation far from straightforward</li> -<li>management of additional server instances</li> -<li>duplication of functionality, bloat</li> -<li>update strategy</li> -</ul> -</blockquote> -</div> -<div class="slide" id="documentation"> -<h1>Documentation</h1> -<blockquote> -<ul class="simple"> -<li>scattered/outdated documentation</li> -<li>maintenance -- too many places to consider (error prone) -- ideally autogenerated from code</li> -<li>ideally combined with tests (availability, API coverage, API compliance)</li> -</ul> -</blockquote> -</div> -<div class="slide" id="client-experiences"> -<h1>Client experiences</h1> -</div> -<div class="slide" id="open-issues"> -<h1>Open issues</h1> -<dl class="docutils"> -<dt>Workflow for</dt> -<dd><ul class="first last simple"> -<li>API unification and updates</li> -<li>issue and conflict reporting/resolution</li> -</ul> -</dd> -<dt>Documentation</dt> -<dd><ul class="first last simple"> -<li>location</li> -<li>format (Swagger, Wiki, ...)</li> -<li>maintenance</li> -<li>link to inventories, tests</li> -</ul> -</dd> -</dl> -<p>...</p> -</div> -<div class="slide" id="opentox-apis"> -<h1>OpenTox APIs</h1> -<p><a class="reference external" href="http://opentox.org/dev/apis/api-1.2">http://opentox.org/dev/apis/api-1.2</a></p> -<p><a class="reference external" href="http://api.toxbank.net">http://api.toxbank.net</a></p> -<p><a class="reference external" href="http://enanomapper.github.io/API">http://enanomapper.github.io/API</a></p> -<p><a class="reference external" href="http://app.jaqpot.org:8080/jaqpot/swagger">http://app.jaqpot.org:8080/jaqpot/swagger</a></p> -<p><a class="reference external" href="https://enm.in-silico.ch/api/dist">https://enm.in-silico.ch/api/dist</a></p> -</div> -<div class="slide" id="next-steps"> -<h1>Next steps</h1> -</div> -</div> -</body> -</html> |