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| -rw-r--r-- | views/presentations.haml | 24 | ||||
| -rw-r--r-- | views/projects.haml | 31 | ||||
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| -rw-r--r-- | views/software.haml | 74 | ||||
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diff --git a/views/about.haml b/views/about.haml deleted file mode 100644 index d53a8d4..0000000 --- a/views/about.haml +++ /dev/null @@ -1,24 +0,0 @@ -%em in silico -toxicology is a small research oriented company focussing on the development of -%a{:href => "http://en.wikipedia.org/wiki/Open_source_software", :rel => "external"} open source -predictive toxicology software and services. We are specialized in developing and applying advanced data mining algorithms for complex chemical and biological data. - -%h1 Contact -%em in silico toxicology gmbh -%br Rastatterstrasse 41 -%br CH-4057 Basel, Switzerland -%br - Phone: +41-774339164 - %br - Email: - %a{ :href => "mailto:helma@in-silico.ch" } helma@in-silico.ch - - -%h1 History -%em in silico -toxicology gmbh is a spin-off company of the -%a{ :href => "http://ml.informatik.uni-freiburg.de/", :rel => "external" } Machine Learning Lab -( -%a{ :href => "http://www.uni-freiburg.de", :rel => "external"} University Freiburg -). It was founded in 2004 as a single person enterprise by Christoph Helma and transformed into a gmbh (ltd) in 2010. - diff --git a/views/awards.haml b/views/awards.haml deleted file mode 100644 index ac536a8..0000000 --- a/views/awards.haml +++ /dev/null @@ -1,4 +0,0 @@ -%ul - %li Research Price for Alternative Methods to Animal Experiments (German Federal Ministry on Consumer Protection, Food and Agriculture, 2005) - %li Research Prize for Cancer Research without Animal Experiments (Doctors Against Animal Experiments, 2006) - diff --git a/views/blog.haml b/views/blog.haml deleted file mode 100644 index 9286fac..0000000 --- a/views/blog.haml +++ /dev/null @@ -1,2 +0,0 @@ -Scientific and technical background, tips and tricks and FAQs can be found in our -%a{:href => "http://opentox.github.com", :rel => "external"} blog. diff --git a/views/commercial.haml b/views/commercial.haml deleted file mode 100644 index 80bd527..0000000 --- a/views/commercial.haml +++ /dev/null @@ -1,24 +0,0 @@ -Installing our software from public repositories and configuring services and integrating them in an existing IT infrastructure requires technical expertise and can be time consuming. For this reason -%em in silico -toxicology gmbh offers commercial grade services and support for clients who intend to outsource these tasks to the original developer. We can offer for example - -%ul - - %li - Lazar - %a{:href => "http://en.wikipedia.org/wiki/Software_as_a_service", :rel => "external"} software as a service - (SaaS): Secure and confidential predictions for individual compounds and compound libraries - %li Virtual appliances with lazar software for in-house/desktop installation - %li Preinstalled and configured servers for the intranet - %li Local installation services - %li Phone and email support (during the installation phase or as a yearly contract) - %li Virtual toxicity screening of compounds and libraries - %li Development of prediction models for new endpoints - %li Scientific programming, contract research and consulting - - -Our experience shows, that application areas and technical requirements are very different from client to client. For this reason we do not offer prepackaged solutions, but try to understand the special requirements of each client before making an offer. - -Please send an email to -%a{:href => "mailto:info@in-silico.ch"} info@in-silico.ch -with a brief description of your application area, relevant endpoints and technical/legal constraints if you are interested in our services. diff --git a/views/contact.haml b/views/contact.haml deleted file mode 100644 index b4441a0..0000000 --- a/views/contact.haml +++ /dev/null @@ -1,11 +0,0 @@ -%em in silico toxicology gmbh -%p - Rastatterstrasse 41 - %br CH-4057 Basel - %br Switzerland -%p - Phone: +41-774339164 - %br - Email: - %a{ :href => "mailto:helma@in-silico.ch" } helma@in-silico.ch - diff --git a/views/layout.haml b/views/layout.haml deleted file mode 100644 index e7e1aca..0000000 --- a/views/layout.haml +++ /dev/null @@ -1,63 +0,0 @@ -!!! -%html - %head - %meta{ :content => "text/html; charset=us-ascii", "http-equiv" => "content-type" } - %meta{ :name => "robots", :content => "all" } - %meta{ :name => "author", :content => "Christoph Helma, Andreas Maunz, Denis Gebele" } - %script{:src=>"/javascripts/jquery.min.js"} - %script{:src=>"/javascripts/bootstrap.min.js"} - %script{:src=>"/javascripts/ist.js"} - %link{:rel=>'stylesheet', :href=>'/css/bootstrap.min.css', :type => "text/css"} - %link{:rel=>'stylesheet', :href=>'/style.css', :type => "text/css"} - %title in silico toxicology - - %body - %header.page-header - %div.row - %div.col-md-2 - %img.media-object{:src=>"/images/IST_logo_s.png", :alt=>"logo", :width=>"120px", :style=>"margin:0 3em 0 2em;"} - %div.col-md-10 - %h1.media-heading{:style=>"text-align:right;"} - %em in silico - toxicology gmbh - #nav.navbar.navbar-default - %div.navbar-header - %button.navbar-toggle{:type=>"button", :data=>{:toggle=>"collapse", :target=>"#navbar"}} - %span{:class=>"icon-bar"} - %span{:class=>"icon-bar"} - %span{:class=>"icon-bar"} - #navbar.navbar-collapse.collapse - %ul.nav.navbar-nav - %li{:class => ("active" if /^\/$/ =~ request.path )} - %a{ :href => "/" } Software and services - %li{:class => ("active" if /commercial/ =~ request.path )} - %a{ :href => "/commercial" } Commercial - %li{:class => ("active" if /publications/ =~ request.path )} - %a{ :href => "/publications" } Publications - %li{:class => ("active" if /presentations/ =~ request.path )} - %a{ :href => "/presentations" } Presentations - %li{:class => ("active" if /blog/ =~ request.path )} - %a{ :href => "/blog" } Blog - %li{:class => ("active" if /projects/ =~ request.path )} - %a{ :href => "/projects" } Projects - %li{:class => ("active" if /awards/ =~ request.path )} - %a{ :href => "/awards" } Awards - %li{:class => ("active" if /about/ =~ request.path )} - %a{ :href => "/about" } About - / - %li{:class => ("active" if /^\/$/ =~ request.path )} - %a{ :href => "/" } Home - %li{:class => ("active" if /software/ =~ request.path )} - %a{ :href => "/software" } - %li{:class => ("active" if /services/ =~ request.path )} - %a{ :href => "/services" } Products and Services - %li{:class => ("active" if /contact/ =~ request.path )} - %a{ :href => "/contact" } Contact - - .content - = yield - - .footer - © - %a{ :href => "http://www.in-silico.ch/" } in silico toxicology gmbh - 2004-#{Time.now.year} diff --git a/views/links.haml b/views/links.haml deleted file mode 100644 index ac902e2..0000000 --- a/views/links.haml +++ /dev/null @@ -1,15 +0,0 @@ -%ul - %li - %a{ :href => "http://www.predictive-toxicology.org/", :target => "_top" } - www.predictive-toxicology.org - \: general information - about Predictive Toxicology, programs, datasets, etc. - %li - %a{ :href => "http://www.predictive-toxicology.org/lazar/", :target => "_top" } - lazar webinterface - \: free toxicity predictions - %li - %a{ :href => "http://www.alfadeo.de/in-silico/", :target => "_top" } - in - silico art - diff --git a/views/presentations.haml b/views/presentations.haml deleted file mode 100644 index ca593fa..0000000 --- a/views/presentations.haml +++ /dev/null @@ -1,24 +0,0 @@ -View recent presentations and slides : -%ul - %li - %a{:href => "/presentations/nmsa-malaga/malaga-presentation.html", :rel => "external"} nano-lazar: A framework for nanoparticle read across risk assessment - (New Tools and Approaches for Nanomaterial Safety Assessment (NMSA), Malaga, Spain, 7-9 February 2017) - %li - %a{:href => "/presentations/opentox-rheinfelden/opentox-workshop.html", :rel => "external"} Nanomaterial read across predictions with nano-lazar - (eNanoMapper modelling workshop in Rheinfelden OpenTox Euro 2016) - %li - %a{:href => "/presentations/enanomapper-athens16/athens-workshop.html", :rel => "external"} Filling knowledge gaps in Nanotoxicology with Read Across Predictions, Practice & Requirements - (eNanoMapper Athens 2016) - %li - %a{:href => "/presentations/enanomapper-nano-lazar/enm-presentation.html", :rel => "external"} Validation of read across predictions for nanoparticle toxicities - (eNanoMapper 2016) - %li - %a{:href => "/presentations/opentox-basel16/index.html", :rel => "external"} Extending OpenTox to Nano Safety with eNanoMapper - (OpenTox Basel 2016) - %li - %a{:href => "/presentations/opentox-dublin/index.html", :rel => "external"} Extending OpenTox to Nano Safety with eNanoMapper - (OpenTox Euro Dublin 2015) - %li - %a{:href => "/presentations/in-silico-methods12/index.html", :rel => "external"} In silico methods for toxicity prediction - (2012) - diff --git a/views/projects.haml b/views/projects.haml deleted file mode 100644 index 7110f19..0000000 --- a/views/projects.haml +++ /dev/null @@ -1,31 +0,0 @@ -%em in silico -toxicology gmbh has customers from pharmaceutical, chemical and food industries, collaborates with registration authorities in the establishment of common standards for QSAR predictions and is actively involved in academic research. We participate also in several EU funded projects: -%dl.dl-horizontal - -%h1 Completed: -%dl.dl-horizontal - %dt - %a{ :href => "http://www.enanomapper.net", :rel => "external"} eNanoMapper - %dd - A Database and Ontology Framework for Nanomaterials Design and Safety Assessment - %dt - %a{ :href => "http://www.toxbank.net", :rel => "external"} ToxBank - %dd - Supporting integrated data analysis and servicing of alternative testing methods in toxicology (WP leader) - %dt - %a{:href => "http://www.birmingham.ac.uk/generic/modnanotox/index.aspx", :rel => "external"} ModNanoTox - %dd - Modelling toxicity behaviour of engineered nanoparticles (WP leader) - %dt - %a{ :href => "http://www.opentox.org", :rel => "external"} OpenTox - %dd - An open source predictive toxicology framework (scientific leader, WP leader) - %dt - %a{ :href => "http://www.sens-it-iv.org/", :rel => "external"} Sens-it-iv - %dd - Novel testing strategies for in vitro assessment of allergens (bioinformatics WP leader, through University Freiburg) - %dt - %a{ :href => "http://www.scarlet-project.eu/", :rel => "external"} Scarlet - %dd - Workshop on in silico methods for carcinogenicity and mutagenicity - diff --git a/views/publications.haml b/views/publications.haml deleted file mode 100644 index 721e4dd..0000000 --- a/views/publications.haml +++ /dev/null @@ -1,2 +0,0 @@ -View publications and citations at -%a{:href => "http://scholar.google.com/citations?sortby=pubdate&user=D7z0GgoAAAAJ", :rel => "external"} Google scholar. diff --git a/views/software.haml b/views/software.haml deleted file mode 100644 index bd63d3c..0000000 --- a/views/software.haml +++ /dev/null @@ -1,74 +0,0 @@ -%dl.dl-horizontal - %dt - %a{ :href => "http://lazar.in-silico.ch/", :rel => "external" } lazar - - %dd - %code lazar - ( - %em Lazy Structure- Activity Relationships - ) - takes a chemical structure as input and provides predictions for a variety of toxic properties. - %code lazar - uses an automated and reproducible - %em read across - procedure to calculate predictions. - Rationales for predictions, applicability domain estimations and validation results are presented in a clear graphical interface for the critical examination by toxicological experts. - %code lazar - is built on top of the - %a{:href => "http://www.opentox.org", :rel => "external"} OpenTox - framework. - - %br - %code lazar - can be used - %ul - %li - from a free - %a{ :href => "http://lazar.in-silico.ch/", :rel => "external" } webinterface, - %li - by installing public - %a{ :href => "http://github.com/opentox/lazar", :rel => "external"} source code - ( - %a{ :href => "http://www.gnu.org/copyleft/gpl.html", :rel => "external" } GNU License - ) - from GitHub - %li - or by purchasing a - %a{ :href => '/commercial' } virtual appliance with commercial support - for desktop or intranet installations - %dt - %a{ :href => "https://nano-lazar.in-silico.ch/", :rel => "external" } nano-lazar - - %dd - %code nano-lazar - is a prototype application to do read-across predictions for nanoparticle toxicities. The application is developed in the - %a{:href => "http://www.enanomapper.net", :rel => "external"} eNanoMapper - project. - %dt - %a{:href => "http://www.opentox.org", :rel => "external"} OpenTox - %dd - OpenTox webservices are the building blocks for a predictive toxicology framework. We maintain webservices for - %ul - %li compounds - %li features - %li datasets - %li algorithms - %li models - %li validation - %li authentication and authorisation - %li tasks - - %p and have access to a variety of other OpenTox webservices (e.g. AMBIT database, QMRF/QPRF reporting services). - - %dt - %a{:href => "http://www.toxbank.org", :rel => "external"} ToxBank - %dd - ToxBank provides the computational infrastructure for the SEURAT cluster of EU projects. We develop and maintain OpenTox compatible webservices for storing, searching and analysing experimental data. - -All projects are -hosted under the -%a{ :href => "http://www.gnu.org/copyleft/gpl.html", :rel => "external" } GNU License -at -%a{ :href => "http://github.com/opentox", :rel => "external"} GitHub. - -/ %a{:href => "http://en.wikipedia.org/wiki/Open_source_software"} open source diff --git a/views/style.sass b/views/style.sass deleted file mode 100644 index 59b6ee7..0000000 --- a/views/style.sass +++ /dev/null @@ -1,54 +0,0 @@ -$fg: #333333 -$bg: #E7E7E7 -$hl: yellow - -body - margin: 3em - height: 100% - font-family: Verdana - background-color: white - color: $fg - - .page-header - h1 - font-size: x-large - - em - font-size: x-large - - #nav - margin-bottom: 0px - border: none - - #navbar - padding-left: 0px - - h1 - font-size: medium - - dt - font-weight: bold - - em - font-family: serif - font-style: italic - font-size: large - - code - background-color: $bg - color: black - font-family: monospace - font-weight: bold - font-size: large - - - .content - background-color: $bg - padding: 1.5em - padding-top: 2.5em - min-height: 300px - - .footer - background-color: white - - |