install


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#!/bin/sh
# Main Opentox-ruby install script
# Author: Christoph Helma, Andreas Maunz

if [ "$(id -u)" = "0" ]; then
  echo "This script must not be run as root" 1>&2
  exit 1
fi

echo
echo "Warning! If all IST services are stoppped press return, else <Ctrl+C> to stop installation."
echo "Note: Your data will be backupped."
read help_var
echo 

mkdir -p $HOME/tmp/ >/dev/null 2>&1
DATE=`date +_%Y%m%d_%H_%M`
if [ -f "$HOME/.opentox-ui.sh" ]
then
  mv -v --backup=numbered $HOME/.opentox-ui.sh $HOME/.opentox-ui.sh$DATE
else
  echo "$HOME/.opentox-ui.sh not found (nothing to backup)."
fi
if [ -d "$HOME/.opentox" ]
then
  mv -v --backup=numbered -T $HOME/.opentox $HOME/.opentox$DATE
else
  echo "$HOME/.opentox not found (nothing to backup)."
fi
if [ -d "$HOME/opentox-ruby" ]
then
  mv -v --backup=numbered -T $HOME/opentox-ruby $HOME/opentox-ruby$DATE
else
  echo "$HOME/opentox-ruby not found (nothing to backup)."
fi 
LOG="$HOME/tmp/`basename $0`-log.txt"
. "./utils.sh"
echo
echo "Opentox-ruby installation."
echo "You may need to give root password for some privileged actions right now and later:"
echo
cmd="sudo echo -n \"\"" && run_cmd "$cmd" "Acquire privileges"

echo "Cleaning up $HOME/tmp files."
rm -rf $HOME/tmp/openbabel* $HOME/tmp/kernlab* $HOME/tmp/ruby*

. "./base-install.sh"
. "./ruby.sh"
. "./openbabel.sh"
. "./kernlab.sh"
. "./opentox-ruby.sh"

if [ "$install" != "gem" ]
then
  . "./nginx.sh"
  . "./redis.sh"
  . "./opentox-webservices.sh"
fi

echo
echo "Installation finished and system configured."
echo "Destination: '$OT_PREFIX'" 
echo "Nginx: '$NGINX_DEST'"
echo "Redis: '$REDIS_DEST'"
echo "IMPORTANT: Include the file '$OT_UI_CONF' in your shell or system startup to have the system automatically configured."
echo