1 files changed, 33 insertions, 0 deletions
diff --git a/nch/05_compute_features.rb b/nch/05_compute_features.rb
new file mode 100755
index 0000000..1677217
--- /dev/null
+++ b/nch/05_compute_features.rb
@@ -0,0 +1,33 @@
+#!/usr/bin/env ruby
+
+require "./config.rb"
+
+require "bundler"
+Bundler.require
+
+DATA.each do |d|
+  $stderr.puts "\ndataset name #{d}"
+
+  next if d=="LOAEL-mg"
+
+  f = new_feature_dataset_uri(d)
+  puts "Feature dataset: "+f
+
+#  dataset = OpenTox::Dataset.new 
+#  dataset.upload File.join("data/03/#{d}_uniq.csv")
+#  puts "Dataset: "+dataset.uri
+#  info(dataset)
+#
+#  feature_names =  File.open("data/04/#{d}.feature_names","r").read.chomp.split(",")
+#  puts "Features: "+feature_names.inspect
+#
+#  puts feature_dataset_uri = wait_for_task(OpenTox::RestClientWrapper.post("http://localhost:8081/algorithm/descriptor/physchem",{:dataset_uri => dataset.uri, :descriptors => feature_names}))
+#  puts "Feature dataset: "+feature_dataset_uri
+#  info(OpenTox::Dataset.new(feature_dataset_uri))
+
+  csv_string = OpenTox::Dataset.new(f).to_csv(true)
+  File.open("data/05/#{d}_new-features.csv","w").puts csv_string
+  puts "Feature dataset written to data/05/#{d}_new-features.csv"
+  puts ""
+
+end