1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
|
require 'minitest/autorun'
require 'capybara'
require 'capybara-webkit'
ENV['DISPLAY'] ="localhost:1.0"
Capybara.register_driver :webkit do |app|
Capybara::Webkit::Driver.new(app).tap{|d| d.browser.ignore_ssl_errors}
end
Capybara.default_driver = :webkit
Capybara.default_max_wait_time = 20
Capybara.javascript_driver = :webkit
Capybara.run_server = false
Capybara.app_host = "http://localhost:8088"
begin
puts "Service URI is: http://localhost:8088"
rescue
puts "Unable to start service."
exit
end
class LazarWebTest < MiniTest::Test
def self.test_order
:sorted
end
include Capybara::DSL
def test_00_xsetup
`Xvfb :1 -screen 0 1024x768x16 2>/dev/null &`
sleep 2
end
def test_01_visit
visit('/predict')
assert page.has_content?('Lazar Toxicity Predictions')
assert page.has_content?("Draw a chemical structure")
assert page.has_content?("enter")
assert page.has_content?("upload")
assert page.has_content?("Select one or more endpoints")
assert page.has_content?("Acute toxicity")
assert page.has_content?("Fathead minnow")
assert page.has_content?("Carcinogenicity")
assert page.has_content?("Rat")
assert page.has_content?("Rodents (multiple species/sites)")
assert page.has_content?("Mouse")
assert page.has_content?("Maximum Recommended Daily Dose")
assert page.has_content?("Human")
assert page.has_content?("Predict")
end
def test_02_insert_wrong_smiles
visit('/')
page.fill_in 'identifier', :with => "blahblah"
check('selection[Rat]')
first(:button, '>>').click
assert page.has_content?('Attention')
end
def test_03_check_all_links_exists
visit('/')
links = ["Details | Validation", "SMILES", "toxicology gmbh 2004 - #{Time.now.year.to_s}"]
links.each{|l| assert page.has_link?(l), "true"}
end
def test_04_predict
visit('/')
page.fill_in('identifier', :with => "NNc1ccccc1")
check('selection[Rat]')
first(:button, '>>').click
assert page.has_content?('Carcinogenicity (Rat)'), "true"
assert page.has_content?('Type: Classification'), "true"
assert page.has_content?('Prediction: active'), "true"
assert page.has_content?('Confidence: 0.019'), "true"
assert page.has_content?('Neighbors'), "true"
assert page.has_content?('Compound'), "true"
assert page.has_content?('Measured Activity'), "true"
assert page.has_content?('Similarity'), "true"
=begin
assert page.has_link?('Significant fragments'), "true"
assert page.has_link?('v'), "true"
open 'significant fragments' view
find_link('linkPredictionSf').click
sleep 5
within_frame('details_overview') do
assert page.has_content?('Predominantly in compounds with activity "inactive"'), "true"
assert page.has_content?('Predominantly in compounds with activity "active"'), "true"
assert page.has_content?('p value'), "true"
# inactive
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]:[#6&a]-[#7&A]'), "true"
assert page.has_content?('0.98674'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a]:[#6&a]:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a]:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a](-[#7&A])(:[#6&a])'), "true"
assert page.has_content?('0.97699'), "true"
assert page.has_content?('[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99605'), "true"
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99791'), "true"
assert page.has_content?('[#6&a]:[#6&a]:[#6&a]:[#6&a]:[#6&a]'), "true"
assert page.has_content?('0.99985'), "true"
# active
assert page.has_content?('[#7&A]-[#7&A]'), "true"
assert page.has_content?('0.99993'), "true"
# close 'significant fragments' view
find_button('closebutton').click
end
find_link('link0').click
sleep 2
assert page.has_content?('Supporting information'), "true"
first(:link, 'linkCompound').click
sleep 5
within_frame('details_overview') do
assert page.has_content?('SMILES:'), "true"
assert page.has_content?('c1ccc(cc1)NN'), "true"
assert page.has_content?('InChI:'), "true"
assert page.has_content?('1S/C6H8N2/c7-8-6-4-2-1-3-5-6/h1-5,8H,7H2'), "true"
assert page.has_content?('Names:'), "true"
assert page.has_content?('Phenylhydrazine'), "true"
assert page.has_link?('PubChem read across'), "true"
end
=end
end
def test_99_kill
`pidof Xvfb|xargs kill`
`kill #{@@pid.to_i}`
end
end
|