diff options
| author | gebele <gebele@in-silico.ch> | 2017-01-25 16:25:15 +0100 |
|---|---|---|
| committer | gebele <gebele@in-silico.ch> | 2017-01-25 16:25:15 +0100 |
| commit | 5b38be51d773011070e5592d423d821124bb2a05 (patch) | |
| tree | bd17f0cefd38f8cae4016187e36d2a4e0a507fc6 | |
| parent | 14811ed8b9ce89e425299e420ebb169c883e41e7 (diff) | |
| parent | 93d0af1f4049534d26167f7437b8396aeb186762 (diff) | |
Merge branch 'master' of https://github.com/opentox/lazar-poster
34 files changed, 1799 insertions, 105 deletions
@@ -17,9 +17,9 @@ exampleposter: nmsa-ist-services: ./md2tex.sh nmsa-ist-services.tex $(PDFLATEX) nmsa-ist-services.tex - # $(BIBTEX) nmsa-ist-services - # $(PDFLATEX) nmsa-ist-services.tex - # $(PDFLATEX) nmsa-ist-services.tex + $(BIBTEX) nmsa-ist-services + $(PDFLATEX) nmsa-ist-services.tex + $(PDFLATEX) nmsa-ist-services.tex #./dockercmd.sh /bin/sh -c "./md2tex.sh nmsa-ist-services.tex && pdflatex nmsa-ist-services.tex" # Poster enm-ontoviewer diff --git a/beamercolorthemeIST.sty b/beamercolorthemeIST.sty index 7a039f6..fac5443 100644 --- a/beamercolorthemeIST.sty +++ b/beamercolorthemeIST.sty @@ -49,9 +49,10 @@ \lstloadlanguages{Ruby} \lstloadlanguages{Bash} \lstset{% - basicstyle=\ttfamily\color{black}, + language=Bash, + basicstyle=\footnotesize\ttfamily\color{black}, commentstyle = \ttfamily\color{darkgrey}, - keywordstyle=\ttfamily\color{blue}, + keywordstyle=\ttfamily\color{black}, stringstyle=\color{red}, backgroundcolor=\color{lightgrey}} diff --git a/beamerthemeIST.sty b/beamerthemeIST.sty index 51205f4..58b009a 100644 --- a/beamerthemeIST.sty +++ b/beamerthemeIST.sty @@ -22,7 +22,7 @@ \lstset{breakatwhitespace, basicstyle=\small\ttfamily, - keywordstyle=\footnotesize\color{blue}\ttfamily + keywordstyle=\footnotesize\color{black}\ttfamily columns=fullflexible, keepspaces, breaklines, @@ -143,15 +143,30 @@ \begin{columns}[t] \begin{column}{.01\paperwidth} \end{column} - \begin{column}{.68\paperwidth} - \vskip2.2ex + \begin{column}{.42\paperwidth} + \vskip4.4ex + \small {\insertfooter} \end{column} - \begin{column}{.30\paperwidth} + \begin{column}{.22\paperwidth} + \begin{center} + \small + \justifying + \texttt{http://enanomapper.net} + This project has received funding from + the European Union's Seventh + Framework Programme for research, + technological development and + demonstration under grant agreement + no 604134. + \end{center} + \end{column} + \begin{column}{.32\paperwidth} \begin{center} \hfill - \includegraphics[width=0.32\linewidth]{./images/eNM-logo.eps}\hspace*{1ex}\vspace*{1ex} - \includegraphics[width=0.6\linewidth]{./images/logo-ce-horizontal-en-quadri.eps} + \includegraphics[width=0.30\linewidth]{./images/eNM-logo.eps}\hspace*{1ex}\vspace*{1ex} + \hskip4ex + \includegraphics[width=0.52\linewidth]{./images/logo-ce-horizontal-en-quadri.eps} \vskip2ex \end{center} \end{column} diff --git a/images/rest_integration.pdf b/images/rest_integration.pdf new file mode 100644 index 0000000..f196a9a --- /dev/null +++ b/images/rest_integration.pdf @@ -0,0 +1,1506 @@ +%PDF-1.4 +%âăĎÓ +1 0 obj + << + /Title () + /Author () + /Subject () + /Keywords () + /Creator (yExport 1.5) + /Producer (org.freehep.graphicsio.pdf.YPDFGraphics2D 1.5) + /CreationDate (D:20170120160949+01'00') + /ModDate (D:20170120160949+01'00') + /Trapped /False + >> +endobj +2 0 obj + << + /Type /Catalog + /Pages 3 0 R + /ViewerPreferences 4 0 R + /OpenAction [5 0 R /Fit] + >> +endobj +4 0 obj + << + /FitWindow true 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interface <https://sparql.enanomapper.net> * BioPortal <http://bioportal.bioontology.org> -* UniProt <http://www.uniprot.org/uniprot>
\ No newline at end of file +* UniProt <http://www.uniprot.org/uniprot> diff --git a/markdown_blocks/integration_summary.md b/markdown_blocks/integration_summary.md index c62f645..871516a 100644 --- a/markdown_blocks/integration_summary.md +++ b/markdown_blocks/integration_summary.md @@ -1,6 +1,6 @@ During the eNanoMapper project in silico toxicologies (IST) public services were adapted to the specification of the eNanoMapper API and new nanoparticle -specific developments were implemented. This poster will depict the +specific developments were implemented. This poster depict the interaction of IST services with eNanoMapper resources of other partners which covers use cases like data download/mirroring, augmentation of GUIs with ontology queries and nanoparticle descriptor calculation. diff --git a/markdown_blocks/rest_aa.md b/markdown_blocks/rest_aa.md index 2022c54..3dca640 100644 --- a/markdown_blocks/rest_aa.md +++ b/markdown_blocks/rest_aa.md @@ -1,5 +1,6 @@ Data confidentiality, authentication and authorization (AA) is a common requirement for many resources. Within the OpenTox\cite{hardy2010collaborative} project, in-silico toxicology gmbh has implemented a single-sign-on method with an OpenLDAP backend for user management -and OpenAM for authentication and authorization. The revised technic is also used in eNanoMapper services to provide access control. -Conforming to the OpenTox web service architecture principles\cite{hardy2010collaborative}, eNanoMapper services will be decoupled from AAI. -This provides the opportunity to deploy a service without A&A, if/when possible.
\ No newline at end of file +and OpenAM for authentication and authorization. +This system was updated and revised for eNanoMapper and provides access control for the current services. +Conforming to the OpenTox web service architecture principles\cite{hardy2010collaborative}, eNanoMapper services can be decoupled from AA. +This provides the opportunity to deploy a service without A&A, if required (e.g. for local installations).
\ No newline at end of file diff --git a/markdown_blocks/rest_examples.md b/markdown_blocks/rest_examples.md index 3b3789d..7bd49d6 100644 --- a/markdown_blocks/rest_examples.md +++ b/markdown_blocks/rest_examples.md @@ -1,14 +1,14 @@ -get an URI list for all models: +Get an URI list for all models: ```Bash curl -X GET --header 'Accept: text/uri-list' -H 'accept:text/uri-list' 'https://enm.in-silico.ch/model' ``` -retrieve an JSON representation of a model: -```Bash +Retrieve an JSON representation of a model: +```bash curl -X GET -H 'Accept: application/json' -H 'accept: application/json' 'https://enm.in-silico.ch/model/<MODELID>' ``` -predict a nano-particle: +Predict a nano-particle: ```Bash - curl -X POST -H 'Content-Type: application/x-www-form-urlencoded' -H 'Accept:text/html' -d 'identifier= \ https://enm.in-silico.ch/nanoparticle/<NANOPARTICLEID>' 'https://enm.in-silico.ch/model/<MODELID>' + curl -X POST -H 'Content-Type: application/x-www-form-urlencoded' -H 'Accept:text/html' -d 'identifier= https://enm.in-silico.ch/nanoparticle/<NANOPARTICLEID>' 'https://enm.in-silico.ch/model/<MODELID>' ```
\ No newline at end of file diff --git a/markdown_blocks/rest_integration.md b/markdown_blocks/rest_integration.md new file mode 100644 index 0000000..d63f909 --- /dev/null +++ b/markdown_blocks/rest_integration.md @@ -0,0 +1,9 @@ +lazar-rest provides a REST webservice for the nano-lazar framework. +The lazar framework integrates internal libraries, eNanoMapper +resources (Data Warehouse and Ontologies) and external resources like UniProt and +BioPortal. lazar-rest services make the lazar framework accessible +for other webservices and web applications and for users who prefer the +command line over graphical user interfaces. + + +{width=1400px}
\ No newline at end of file diff --git a/markdown_blocks/rest_interaction.md b/markdown_blocks/rest_interaction.md deleted file mode 100644 index 2effd83..0000000 --- a/markdown_blocks/rest_interaction.md +++ /dev/null @@ -1,3 +0,0 @@ -The lazar-rest webservice text ... - -
\ No newline at end of file diff --git a/markdown_blocks/rest_lazar-rest.md b/markdown_blocks/rest_lazar-rest.md index 3c887ca..1058e38 100644 --- a/markdown_blocks/rest_lazar-rest.md +++ b/markdown_blocks/rest_lazar-rest.md @@ -1,3 +1,3 @@ -lazar-rest is a gem library written in Ruby. It provides a REST API webservice to lazar and nano-lazar. -The API is documented in the Swagger RESTful API documentation specification version 2.0. -This specification is conform to the Open API Iniciative specification.
\ No newline at end of file +lazar-rest is a Ruby library, that provides a REST interface for nano-lazar. +The API is compatible with eNanoMapper specifications and documented with the Swagger API framework (version 2.0), +which conforms with the Open API Initiative specification.
\ No newline at end of file diff --git a/markdown_blocks/rest_lazar_description.md b/markdown_blocks/rest_lazar_description.md index 2096877..1272146 100644 --- a/markdown_blocks/rest_lazar_description.md +++ b/markdown_blocks/rest_lazar_description.md @@ -1,4 +1,3 @@ *lazar* (lazy structure–activity relationships)\cite{Maunz2013} is a modular framework for read across predictions of chemical toxicities. -Within the European Union’s FP7 eNanoMapper project lazar was extended with capabilities to handle nanomaterial data, -interfaces to other eNanoMapper services (databases and ontologies) and a stable and user-friendly graphical interface -for nanoparticle read-across predictions. lazar provides a ruby gem library to this developments.
\ No newline at end of file +Within the European Union’s FP7 eNanoMapper project lazar was extended with capabilities to handle nanomaterial data and interfaces +to other eNanoMapper services (databases and ontologies). lazar libraries are publicly distributed as Ruby gems.
\ No newline at end of file diff --git a/markdown_blocks/rest_links.md b/markdown_blocks/rest_links.md index 682e16e..356f473 100644 --- a/markdown_blocks/rest_links.md +++ b/markdown_blocks/rest_links.md @@ -1,21 +1,27 @@ -* Nano-lazar Restful API GUI. Swagger UI based documentation for API visualization and interaction. +* Nano-lazar REST API GUI. Swagger UI based documentation for API visualization and interaction. \ <https://enm.in-silico.ch> * Nano-lazar Swagger API definition file <https://enm.in-silico.ch/api/api.json> -* Nano-lazar Restful API services source code repository +* Nano-lazar REST API services source code repository <https://github.com/opentox/lazar-rest> -* Nano-lazar Restful API services Rubydocs gem library documentation +* Nano-lazar REST API services gem library + <https://rubygems.org/gems/lazar-rest> + +* Nano-lazar REST API services Rubydocs gem library documentation <http://www.rubydoc.info/gems/lazar-rest> -* Nano-lazar Restful API issue tracker +* Nano-lazar REST API issue tracker <https://github.com/opentox/lazar-rest/issues> * Lazar (source code) <https://github.com/opentox/lazar> -* Nano-lazar GUI (graphical user interface) - <https://github.com/eNanoMapper/nano-lazar> +* Swagger framework for APIs + <http://swagger.io/> + +* Open API Initiative + <https://www.openapis.org/>
\ No newline at end of file diff --git a/markdown_blocks/rest_qmrf.md b/markdown_blocks/rest_qmrf.md new file mode 100644 index 0000000..6a3997b --- /dev/null +++ b/markdown_blocks/rest_qmrf.md @@ -0,0 +1,6 @@ +lazar-rest supports (Q)SAR Model Reporting Format (QMRF). The integrated QSAR-report library\cite{rautenberg_micha_2016_179038} +generates QMRF reports in XML format with basic model information (e.g. +validation results according to OECD guidelines). The QMRF report +library is independent of other IST libraries (e.g. lazar, +nano-lazar-gui, lazar-rest) and can be used by other applications that +need QMRF reporting.
\ No newline at end of file diff --git a/markdown_blocks/rest_rest.md b/markdown_blocks/rest_rest.md new file mode 100644 index 0000000..d8d670e --- /dev/null +++ b/markdown_blocks/rest_rest.md @@ -0,0 +1,4 @@ +Representational State Transfer or RESTful API is an architectural style to design webservices. +REST uses HTTP protocol requests GET, POST, PUT, DELETE for the communication between distributed webservices. +nano-lazar as a part of the eNanoMapper analysis and modelling infrastructure is built upon the OpenTox web services framework following +the principles of the Representational State Transfer (REST) design model.
\ No newline at end of file diff --git a/markdown_blocks/rest_screenshot.md b/markdown_blocks/rest_screenshot.md new file mode 100644 index 0000000..4d6140c --- /dev/null +++ b/markdown_blocks/rest_screenshot.md @@ -0,0 +1 @@ +{width=1540px}
\ No newline at end of file diff --git a/markdown_blocks/rest_screenshot_1.md b/markdown_blocks/rest_screenshot_1.md deleted file mode 100644 index 51116f2..0000000 --- a/markdown_blocks/rest_screenshot_1.md +++ /dev/null @@ -1,8 +0,0 @@ -{width=1540px} -\ -\tiny Figure 1: nano-lazar Swagger UI - service overview -\ -{width=1540px} -\ -\tiny Figure 2: nano-lazar GET model data -\ diff --git a/markdown_blocks/rest_summary.md b/markdown_blocks/rest_summary.md index 7785192..3b77d93 100644 --- a/markdown_blocks/rest_summary.md +++ b/markdown_blocks/rest_summary.md @@ -1,5 +1,5 @@ During the eNanoMapper project *in silico* toxicologies (IST) webservices were adapted in order to provide REST interfaces that adhere to eNanoMapper standards and specifications and supplemented with interactive SWAGGER -documentation. This poster will give an overview of ISTs eNanoMapper API +documentation. This poster gives an overview of ISTs eNanoMapper API compatible REST services\cite{rautenberg_micha_2016_187328} and demonstrate its usage with practical examples. diff --git a/markdown_blocks/rest_swagger_ui.md b/markdown_blocks/rest_swagger_ui.md new file mode 100644 index 0000000..2e8e5eb --- /dev/null +++ b/markdown_blocks/rest_swagger_ui.md @@ -0,0 +1 @@ +Swagger UI is used as an interactive documentation and visualization platform for the lazar-rest API.
\ No newline at end of file diff --git a/markdown_blocks/services_aa.md b/markdown_blocks/services_aa.md new file mode 100644 index 0000000..b28afa5 --- /dev/null +++ b/markdown_blocks/services_aa.md @@ -0,0 +1,4 @@ +Infrastructure for eNanoMapper authentication and authorization. + +* Single sign-on authorization & authentication service + <https://openam.in-silico.ch/openam/> diff --git a/markdown_blocks/services_docker.md b/markdown_blocks/services_docker.md new file mode 100644 index 0000000..f06a0ac --- /dev/null +++ b/markdown_blocks/services_docker.md @@ -0,0 +1,4 @@ +Docker, is an open platform container management tool that allows easily to manage, build, ship, and run distributed applications. + +* Public available dockerized IST services on Docker Hub + <https://hub.docker.com/u/insilicotox/> diff --git a/markdown_blocks/services_infrastructure.md b/markdown_blocks/services_infrastructure.md new file mode 100644 index 0000000..ddcc090 --- /dev/null +++ b/markdown_blocks/services_infrastructure.md @@ -0,0 +1,22 @@ +eNanoMapper infrastructure services implemented and maintained by IST. + +* Bugzilla issue tracker for eNanoMapper + <https://bugzilla.enanomapper.net/> + +* Mailman mailing list for partner, developers and associate-partners + <http://lists.enanomapper.net/> + +* Registration form and user management + <https://purl.enanomapper.net/register/> + +* Online visualization of eNanoMapper specification documents + <http://specs.enanomapper.net> + +* Maintenance for scripts to query the eNM ontology at purl.enanomapper.net + (e.g. <https://purl.enanomapper.net/php/ENM_0000018>) + +* LDAP user database server and replication server + <ldap.opentox.org> + +* Blog entries with technical details about eNanoMapper implementations + <http://opentox.github.io/archive> diff --git a/markdown_blocks/services_lazar-rest.md b/markdown_blocks/services_lazar-rest.md new file mode 100644 index 0000000..9a1b028 --- /dev/null +++ b/markdown_blocks/services_lazar-rest.md @@ -0,0 +1,20 @@ +`lazar-rest` provides an eNanoMapper compatible REST API for the `nano-lazar` read-across framework + +* `lazar-rest` Swagger UI documentation for API visualization and interaction. \cite{rautenberg_micha_2016_187328} + <https://enm.in-silico.ch> + +* `lazar-rest` Swagger API definition file + <https://enm.in-silico.ch/api/api.json> + +* `lazar-rest` source code + <https://github.com/opentox/lazar-rest> + +* `lazar-rest` Ruby gem library + <https://rubygems.org/gems/lazar-rest> + +* `lazar-rest` issue tracker + <https://github.com/opentox/lazar-rest/issues> + +* `lazar-rest` API documentation + <http://www.rubydoc.info/gems/lazar-rest> + diff --git a/markdown_blocks/services_lazar.md b/markdown_blocks/services_lazar.md new file mode 100644 index 0000000..e63888d --- /dev/null +++ b/markdown_blocks/services_lazar.md @@ -0,0 +1,19 @@ +`lazar` is a framework for read-across predictions. Within eNanoMapper `lazar` was extended with interfaces for the eNanoMapper infrastructure and capabilities to predict nanomaterial toxicities. + +* `lazar` source code \cite{helma_christoph_2016_215483} + <https://github.com/opentox/lazar> + +* `lazar` Ruby gem library + <https://rubygems.org/gems/lazar> + +* `lazar` issue tracker + <https://github.com/opentox/lazar/issues> + +- `lazar` methodology and validation + <https://github.com/enanomapper/nano-lazar-paper/blob/master/nano-lazar.pdf> + +* `lazar` tutorial + <https://github.com/opentox/lazar/blob/master/README.md> + +* `lazar` API documentation + <http://www.rubydoc.info/gems/lazar> diff --git a/markdown_blocks/services_nano-lazar-paper.md b/markdown_blocks/services_nano-lazar-paper.md new file mode 100644 index 0000000..c61390f --- /dev/null +++ b/markdown_blocks/services_nano-lazar-paper.md @@ -0,0 +1,13 @@ +Detailed description of `nano-lazar` methods and validation results. Results can be reproduced by external researchers with the accompanying docker image. + +* Source code for nano-lazar publication (and oral presentations). + <https://github.com/enanomapper/nano-lazar-paper> + +* Manuscript submitted to Frontiers in Pharmacology + <https://github.com/enanomapper/nano-lazar-paper/blob/master/nano-lazar.pdf> + +* Tutorial for repeating `nano-lazar` validation experiments + <https://github.com/enanomapper/nano-lazar-paper/blob/master/README.md> + +* Docker image for inspection and reproduction of validation experiments + <https://hub.docker.com/r/insilicotox/nano-lazar-paper/> diff --git a/markdown_blocks/services_nano-lazar.md b/markdown_blocks/services_nano-lazar.md new file mode 100644 index 0000000..3122fda --- /dev/null +++ b/markdown_blocks/services_nano-lazar.md @@ -0,0 +1,16 @@ +The `nano-lazar` GUI provides a public webinterface for `nano-lazar` models + +* `nano-lazar` public webinterface \cite{gebele_denis_2017_250818}. + <https://nano-lazar.in-silico.ch> + +* `nano-lazar` source code + <https://github.com/eNanoMapper/nano-lazar> + +* `nano-lazar` Ruby gem library + <https://rubygems.org/gems/nano-lazar> + +* `nano-lazar` issue tracker + <https://github.com/eNanoMapper/nano-lazar/issues> + +* `nano-lazar` API documentation + <http://www.rubydoc.info/gems/nano-lazar> diff --git a/markdown_blocks/services_ontoviewer.md b/markdown_blocks/services_ontoviewer.md new file mode 100644 index 0000000..d50c2d7 --- /dev/null +++ b/markdown_blocks/services_ontoviewer.md @@ -0,0 +1,10 @@ +The eNanoMapper ontology viewer visualizes SPARQL query results from eNM ontologies and data. + +* eNanoMapper ontology viewer \cite{gebele_denis_2017_259384} + <https://query.enanomapper.net/> + +* eNanoMapper ontology viewer source code + <https://github.com/enanomapper/enm-ontoviewer> + +* eNanoMapper ontology viewer issue tracker + <https://github.com/enanomapper/enm-ontoviewer/issues> diff --git a/markdown_blocks/services_qsar-report.md b/markdown_blocks/services_qsar-report.md new file mode 100644 index 0000000..d29a97d --- /dev/null +++ b/markdown_blocks/services_qsar-report.md @@ -0,0 +1,16 @@ +QMRF and QPRF reporting features for `nano-lazar`. This library is accessible from the `nano-lazar` GUI and the `lazar-rest` webservices. + +* `qsar-report` source code \cite{rautenberg_micha_2016_179038} + <https://github.com/opentox/qsar-report> + +* `qsar-report` Ruby gem library + <https://rubygems.org/gems/qsar-report/> + +* `qsar-report` issue tracker + <https://github.com/opentox/qsar-report/issues> + +* `qsar-report` tutorial + <http://opentox.github.io/usage/2016/10/05/qmrf-and-qprf-reporting-library-gem> + +* `qsar-report` API documentation + <http://www.rubydoc.info/gems/qsar-report> diff --git a/markdown_blocks/services_sparql.md b/markdown_blocks/services_sparql.md new file mode 100644 index 0000000..b2a9562 --- /dev/null +++ b/markdown_blocks/services_sparql.md @@ -0,0 +1,7 @@ +SPARQL query interface for eNanoMapper data and ontologies + +* SPARQL endpoint + <https://sparql.enanomapper.net/> + +* Documentation + <http://enanomapper.net/deliverables/d3/20160420_eNanoMapper_D3.2_Data_Management_System_with_extended_search_capabilities_FINAL.pdf> diff --git a/markdown_blocks/services_summary.md b/markdown_blocks/services_summary.md index 3b7305c..9f13628 100644 --- a/markdown_blocks/services_summary.md +++ b/markdown_blocks/services_summary.md @@ -1,6 +1,6 @@ During the eNanoMapper project *in silico* toxicologies (IST) public server infrastructure was adapted to the requirements of the eNanoMapper project and -augmented with new developments. This poster will give a comprehensive overview -all IST resources developed within eNanoMapper. Each service will be presented +augmented with new developments. This poster gives a comprehensive overview of +all IST resources developed within eNanoMapper. Each service is presented with a brief description and links to the public interface, source code, documentation and download links for self-contained docker images. diff --git a/nmsa-ist-integration.tex b/nmsa-ist-integration.tex index b1b3a13..c472e36 100644 --- a/nmsa-ist-integration.tex +++ b/nmsa-ist-integration.tex @@ -16,20 +16,14 @@ \begin{frame}{} - \begin{textblock}{80}(1,12) - % \begin{block}{} - \input{./markdown_blocks/company} - % \end{block} - \end{textblock} - - \begin{textblock}{40.5}(1,16) + \begin{textblock}{40.5}(1,11) \begin{block}{Abstract} \input{./markdown_blocks/integration_summary} \end{block} \end{textblock} - \begin{textblock}{40.5}(42.6,16) + \begin{textblock}{40.5}(42.6,11) \begin{block}{Text} \input{./markdown_blocks/integration_text} diff --git a/nmsa-ist-rest.tex b/nmsa-ist-rest.tex index f41b75c..4f89784 100644 --- a/nmsa-ist-rest.tex +++ b/nmsa-ist-rest.tex @@ -7,22 +7,16 @@ \setlength{\TPHorizModule}{1cm} \setlength{\TPVertModule}{1cm} -\title{In silico toxicology nano-lazar API rest services} +\title{In silico toxicology eNanoMapper REST services} \author{M. Rautenberg, C. Helma, D. Gebele} \institute{\emph{in silico} toxicology gmbh, Basel, Switzerland} -\footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch}} +\footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch} \\ \emph{in silico toxicology gmbh} - Rastatterstrasse 41 - CH-4057 Basel, Switzerland } \begin{document} \begin{frame}{} - \begin{textblock}{80}(1,10) - % \begin{block}{} - \input{./markdown_blocks/company} - % \end{block} - \end{textblock} - - \begin{textblock}{40.5}(1,14) + \begin{textblock}{40.5}(1,8.4) \begin{block}{Abstract} \justifying \input{./markdown_blocks/rest_summary} @@ -33,34 +27,44 @@ \input{./markdown_blocks/rest_lazar_description} \end{block} + \begin{block}{REST} + \justifying + \input{./markdown_blocks/rest_rest} + \end{block} + \begin{block}{lazar-rest services} \justifying \input{./markdown_blocks/rest_lazar-rest} \end{block} - \begin{block}{lazar-rest Swagger UI graphical interface} - \vskip.6ex - \input{./markdown_blocks/rest_screenshot_1} + \begin{block}{lazar-rest Swagger interface} + \vskip.2ex + \input{./markdown_blocks/rest_swagger_ui} + \vskip.2ex + \input{./markdown_blocks/rest_screenshot} \end{block} - + \begin{block}{QMRF support} + \justifying + \input{./markdown_blocks/rest_qmrf} + \end{block} \end{textblock} - \begin{textblock}{40.5}(42.6,14) + \begin{textblock}{40.5}(42.6,8.4) - \begin{block}{Interaction with other services} - \input{./markdown_blocks/rest_interaction} + \begin{block}{Integration with eNanoMapper and other services} + \input{./markdown_blocks/rest_integration} \end{block} - \begin{block}{Authorization \& Authentication} + \begin{block}{Authorization \& authentication} \justifying \input{./markdown_blocks/rest_aa} \end{block} - \begin{block}{Practical Linux cURL Command Examples} + \begin{alertblock}{Practical linux cURL command examples} \input{./markdown_blocks/rest_examples} - \end{block} + \end{alertblock} \begin{exampleblock}{Links} \input{./markdown_blocks/rest_links} diff --git a/nmsa-ist-services.tex b/nmsa-ist-services.tex index 7a315c4..542faba 100644 --- a/nmsa-ist-services.tex +++ b/nmsa-ist-services.tex @@ -1,6 +1,6 @@ \documentclass[final]{beamer} \usetheme{IST} -\usepackage[orientation=portrait,size=a0,scale=1.4,debug]{beamerposter} % poster size +\usepackage[orientation=portrait,size=a0,scale=1.3,debug]{beamerposter} % poster size \usepackage[absolute,overlay]{textpos} \usepackage[utf8]{inputenc} @@ -16,44 +16,55 @@ \begin{frame}{} - \begin{textblock}{80}(1,10) - % \begin{block}{} - \input{./markdown_blocks/company} - % \end{block} - \end{textblock} - - \begin{textblock}{40.5}(1,14) + \begin{textblock}{40.5}(1,8.6) \begin{block}{Abstract} \input{./markdown_blocks/services_summary} \end{block} - \begin{block}{Screenshot} - \input{./markdown_blocks/screenshot} + \begin{block}{lazar} + \input{./markdown_blocks/services_lazar} + \end{block} + + \begin{block}{nano-lazar} + \input{./markdown_blocks/services_nano-lazar} + \end{block} + + \begin{block}{nano-lazar-paper} + \input{./markdown_blocks/services_nano-lazar-paper} + \end{block} + + \begin{block}{lazar-rest} + \input{./markdown_blocks/services_lazar-rest} \end{block} - \begin{block}{Markdown tables} - \input{./markdown_blocks/table} + \begin{block}{eNM ontoviewer} + \input{./markdown_blocks/services_ontoviewer} \end{block} + \begin{block}{SPARQL endpoint to eNM ontology and data} + \input{./markdown_blocks/services_sparql} + \end{block} + + \end{textblock} - \begin{textblock}{40.5}(42.6,14) + \begin{textblock}{40.5}(42.6,8.6) - \begin{block}{Maths example} - \input{./markdown_blocks/maths} + \begin{block}{Docker} + \input{./markdown_blocks/services_docker} \end{block} - \begin{alertblock}{Highlighted Box} - \input{./markdown_blocks/exampletext} - \end{alertblock} + \begin{block}{Authorization \& Authentication} + \input{./markdown_blocks/services_aa} + \end{block} - \begin{block}{Code} - \input{./markdown_blocks/code} + \begin{block}{QSAR-reporting} + \input{./markdown_blocks/services_qsar-report} \end{block} - \begin{exampleblock}{Links} - \input{./markdown_blocks/services_links} - \end{exampleblock} + \begin{block}{eNanoMapper infrastructure} + \input{./markdown_blocks/services_infrastructure} + \end{block} \begin{block}{References} \small\bibliography{references} @@ -61,10 +72,6 @@ \end{textblock} - \begin{textblock}{82.1}(1,88) - \input{./markdown_blocks/exampletext} - \end{textblock} - \end{frame} \end{document} diff --git a/references.bib b/references.bib index 30d32b0..e5decae 100644 --- a/references.bib +++ b/references.bib @@ -1,3 +1,23 @@ +@misc{gebele_denis_2017_259384, + author = {Gebele, Denis and + Rautenberg, Micha and + Helma, Christoph}, + title = {e{N}ano{M}apper ontology viewer}, + month = jan, + year = 2017, + doi = {10.5281/zenodo.259384}, + url = {https://doi.org/10.5281/zenodo.259384} +} +@misc{gebele_denis_2017_250818, + author = {Gebele, Denis and + Rautenberg, Micha and + Helma, Christoph}, + title = {nano-lazar}, + month = jan, + year = 2017, + doi = {10.5281/zenodo.250818}, + url = {https://doi.org/10.5281/zenodo.250818} +} @misc{rautenberg_micha_2016_187328, author = {Rautenberg, Micha and Gebele, Denis and |