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authorChristoph Helma <helma@in-silico.ch>2017-01-25 19:08:03 +0100
committerChristoph Helma <helma@in-silico.ch>2017-01-25 19:08:03 +0100
commitd34dc1378990fd2409465588aca9bdbad30300de (patch)
tree8294b35e77e5260b9b8efca625420dd3409f0ad6
parent1971c2098091e7087bcc2d4617420bae998306df (diff)
parent80852e7e7f3b13597480b6385e349acf8ae4d14e (diff)
Merge branch 'master' of github.com:opentox/lazar-poster
-rw-r--r--Makefile6
-rw-r--r--beamercolorthemeIST.sty2
-rw-r--r--markdown_blocks/integration_diagram.md2
-rw-r--r--markdown_blocks/rest_aa.md6
-rw-r--r--markdown_blocks/rest_examples.md12
-rw-r--r--markdown_blocks/rest_integration.md8
-rw-r--r--markdown_blocks/rest_lazar-rest.md2
-rw-r--r--markdown_blocks/rest_lazar_description.md6
-rw-r--r--markdown_blocks/rest_links.md14
-rw-r--r--markdown_blocks/rest_qmrf.md10
-rw-r--r--markdown_blocks/rest_rest.md4
-rw-r--r--markdown_blocks/rest_screenshot.md2
-rw-r--r--markdown_blocks/rest_swagger_ui.md2
-rw-r--r--markdown_blocks/services_infrastructure.md6
-rw-r--r--markdown_blocks/services_lazar-rest.md4
-rw-r--r--markdown_blocks/services_lazar.md2
-rw-r--r--markdown_blocks/services_links.md8
-rw-r--r--markdown_blocks/services_nano-lazar-paper.md5
-rw-r--r--markdown_blocks/services_nano-lazar.md7
-rw-r--r--markdown_blocks/services_ontoviewer.md8
-rw-r--r--markdown_blocks/services_qsar-report.md2
-rw-r--r--markdown_blocks/services_testing.md3
-rw-r--r--nmsa-ist-rest.pdfbin0 -> 735435 bytes
-rw-r--r--nmsa-ist-rest.tex8
-rw-r--r--nmsa-ist-services.pdfbin0 -> 355238 bytes
-rw-r--r--nmsa-ist-services.tex31
-rw-r--r--references.bib10
27 files changed, 95 insertions, 75 deletions
diff --git a/Makefile b/Makefile
index 18ffac1..bf0e1d4 100644
--- a/Makefile
+++ b/Makefile
@@ -35,9 +35,9 @@ nmsa-ist-ontoviewer:
nmsa-ist-integration:
./md2tex.sh nmsa-ist-integration.tex
$(PDFLATEX) nmsa-ist-integration.tex
- # $(BIBTEX) nmsa-ist-integration
- # $(PDFLATEX) nmsa-ist-integration.tex
- # $(PDFLATEX) nmsa-ist-integration.tex
+ $(BIBTEX) nmsa-ist-integration
+ $(PDFLATEX) nmsa-ist-integration.tex
+ $(PDFLATEX) nmsa-ist-integration.tex
#./dockercmd.sh /bin/sh -c "./md2tex.sh nmsa-ist-integration.tex && pdflatex nmsa-ist-integration.tex"
# Poster enm-rest
diff --git a/beamercolorthemeIST.sty b/beamercolorthemeIST.sty
index fac5443..5ad6397 100644
--- a/beamercolorthemeIST.sty
+++ b/beamercolorthemeIST.sty
@@ -50,7 +50,7 @@
\lstloadlanguages{Bash}
\lstset{%
language=Bash,
- basicstyle=\footnotesize\ttfamily\color{black},
+ basicstyle=\ttfamily\color{black},
commentstyle = \ttfamily\color{darkgrey},
keywordstyle=\ttfamily\color{black},
stringstyle=\color{red},
diff --git a/markdown_blocks/integration_diagram.md b/markdown_blocks/integration_diagram.md
index 4d7bc3d..f3ff4ba 100644
--- a/markdown_blocks/integration_diagram.md
+++ b/markdown_blocks/integration_diagram.md
@@ -1 +1 @@
-![nano-lazar integration](./images/integration.pdf "nano-lazar integration"){width=100%} \ No newline at end of file
+![nano-lazar\cite{gebele_denis_2017_250818}\cite{helma_christoph_2016_215483}\cite{rautenberg_micha_2016_187328} integration](./images/integration.pdf "nano-lazar integration"){width=100%} \ No newline at end of file
diff --git a/markdown_blocks/rest_aa.md b/markdown_blocks/rest_aa.md
index 3dca640..ba82911 100644
--- a/markdown_blocks/rest_aa.md
+++ b/markdown_blocks/rest_aa.md
@@ -1,6 +1,6 @@
Data confidentiality, authentication and authorization (AA) is a common requirement for many resources.
-Within the OpenTox\cite{hardy2010collaborative} project, in-silico toxicology gmbh has implemented a single-sign-on method with an OpenLDAP backend for user management
-and OpenAM for authentication and authorization.
+Within the OpenTox\cite{hardy2010collaborative} project, *in-silico* toxicology gmbh has implemented a single-sign-on method with an
+OpenLDAP backend for user management and OpenAM for authentication and authorization.
This system was updated and revised for eNanoMapper and provides access control for the current services.
Conforming to the OpenTox web service architecture principles\cite{hardy2010collaborative}, eNanoMapper services can be decoupled from AA.
-This provides the opportunity to deploy a service without A&A, if required (e.g. for local installations). \ No newline at end of file
+This provides the opportunity to deploy a service without AA, if required (e.g. for local installations). \ No newline at end of file
diff --git a/markdown_blocks/rest_examples.md b/markdown_blocks/rest_examples.md
index 7bd49d6..ef4def2 100644
--- a/markdown_blocks/rest_examples.md
+++ b/markdown_blocks/rest_examples.md
@@ -1,14 +1,20 @@
Get an URI list for all models:
+\footnotesize
+
```Bash
curl -X GET --header 'Accept: text/uri-list' -H 'accept:text/uri-list' 'https://enm.in-silico.ch/model'
```
-
+\normalsize
Retrieve an JSON representation of a model:
-```bash
+\footnotesize
+
+```Bash
curl -X GET -H 'Accept: application/json' -H 'accept: application/json' 'https://enm.in-silico.ch/model/<MODELID>'
```
-
+\normalsize
Predict a nano-particle:
+\footnotesize
+
```Bash
curl -X POST -H 'Content-Type: application/x-www-form-urlencoded' -H 'Accept:text/html' -d 'identifier= https://enm.in-silico.ch/nanoparticle/<NANOPARTICLEID>' 'https://enm.in-silico.ch/model/<MODELID>'
``` \ No newline at end of file
diff --git a/markdown_blocks/rest_integration.md b/markdown_blocks/rest_integration.md
index d63f909..26bd8dc 100644
--- a/markdown_blocks/rest_integration.md
+++ b/markdown_blocks/rest_integration.md
@@ -1,9 +1,9 @@
-lazar-rest provides a REST webservice for the nano-lazar framework.
-The lazar framework integrates internal libraries, eNanoMapper
+`lazar-rest` provides a REST webservice for the `nano-lazar` framework.
+The `lazar` framework integrates internal libraries, eNanoMapper
resources (Data Warehouse and Ontologies) and external resources like UniProt and
-BioPortal. lazar-rest services make the lazar framework accessible
+BioPortal. `lazar-rest` services make the `lazar` framework accessible
for other webservices and web applications and for users who prefer the
command line over graphical user interfaces.
-![nano-lazar service integration](./images/rest_integration.pdf "nano-lazar service integration"){width=1400px} \ No newline at end of file
+![`nano-lazar` service integration](./images/rest_integration.pdf "nano-lazar service integration"){width=1400px} \ No newline at end of file
diff --git a/markdown_blocks/rest_lazar-rest.md b/markdown_blocks/rest_lazar-rest.md
index 1058e38..a866886 100644
--- a/markdown_blocks/rest_lazar-rest.md
+++ b/markdown_blocks/rest_lazar-rest.md
@@ -1,3 +1,3 @@
-lazar-rest is a Ruby library, that provides a REST interface for nano-lazar.
+`lazar-rest` is a Ruby library, that provides a REST interface for `nano-lazar`.
The API is compatible with eNanoMapper specifications and documented with the Swagger API framework (version 2.0),
which conforms with the Open API Initiative specification. \ No newline at end of file
diff --git a/markdown_blocks/rest_lazar_description.md b/markdown_blocks/rest_lazar_description.md
index 1272146..9df224f 100644
--- a/markdown_blocks/rest_lazar_description.md
+++ b/markdown_blocks/rest_lazar_description.md
@@ -1,3 +1,3 @@
-*lazar* (lazy structure–activity relationships)\cite{Maunz2013} is a modular framework for read across predictions of chemical toxicities.
-Within the European Union’s FP7 eNanoMapper project lazar was extended with capabilities to handle nanomaterial data and interfaces
-to other eNanoMapper services (databases and ontologies). lazar libraries are publicly distributed as Ruby gems. \ No newline at end of file
+`lazar` (lazy structure–activity relationships)\cite{Maunz2013} is a modular framework for read across predictions of chemical toxicities.
+Within the European Union’s FP7 eNanoMapper project `lazar` was extended with capabilities to handle nanomaterial data and interfaces
+to other eNanoMapper services (databases and ontologies). `lazar` libraries are publicly distributed as Ruby gems. \ No newline at end of file
diff --git a/markdown_blocks/rest_links.md b/markdown_blocks/rest_links.md
index 356f473..847ed8b 100644
--- a/markdown_blocks/rest_links.md
+++ b/markdown_blocks/rest_links.md
@@ -1,23 +1,23 @@
-* Nano-lazar REST API GUI. Swagger UI based documentation for API visualization and interaction.
+* `nano-lazar` REST API GUI. Swagger UI based documentation for API visualization and interaction.
\
<https://enm.in-silico.ch>
-* Nano-lazar Swagger API definition file
+* `nano-lazar` Swagger API definition file
<https://enm.in-silico.ch/api/api.json>
-* Nano-lazar REST API services source code repository
+* `nano-lazar` REST API services source code repository
<https://github.com/opentox/lazar-rest>
-* Nano-lazar REST API services gem library
+* `nano-lazar` REST API services gem library
<https://rubygems.org/gems/lazar-rest>
-* Nano-lazar REST API services Rubydocs gem library documentation
+* `nano-lazar` REST API services Rubydocs gem library documentation
<http://www.rubydoc.info/gems/lazar-rest>
-* Nano-lazar REST API issue tracker
+* `nano-lazar` REST API issue tracker
<https://github.com/opentox/lazar-rest/issues>
-* Lazar (source code)
+* `lazar` (source code)
<https://github.com/opentox/lazar>
* Swagger framework for APIs
diff --git a/markdown_blocks/rest_qmrf.md b/markdown_blocks/rest_qmrf.md
index 6a3997b..62a8112 100644
--- a/markdown_blocks/rest_qmrf.md
+++ b/markdown_blocks/rest_qmrf.md
@@ -1,6 +1,4 @@
-lazar-rest supports (Q)SAR Model Reporting Format (QMRF). The integrated QSAR-report library\cite{rautenberg_micha_2016_179038}
-generates QMRF reports in XML format with basic model information (e.g.
-validation results according to OECD guidelines). The QMRF report
-library is independent of other IST libraries (e.g. lazar,
-nano-lazar-gui, lazar-rest) and can be used by other applications that
-need QMRF reporting. \ No newline at end of file
+`lazar-rest` supports (Q)SAR Model Reporting Format (QMRF). The integrated QSAR-report library\cite{rautenberg_micha_2016_179038}
+generates QMRF reports in XML format with basic model information (e.g. validation results according
+to OECD guidelines). The QMRF report library is independent of other IST libraries (e.g. `lazar`,
+`nano-lazar`-gui, `lazar-rest`) and can be used by other applications that need QMRF reporting. \ No newline at end of file
diff --git a/markdown_blocks/rest_rest.md b/markdown_blocks/rest_rest.md
index d8d670e..63abcb5 100644
--- a/markdown_blocks/rest_rest.md
+++ b/markdown_blocks/rest_rest.md
@@ -1,4 +1,4 @@
Representational State Transfer or RESTful API is an architectural style to design webservices.
REST uses HTTP protocol requests GET, POST, PUT, DELETE for the communication between distributed webservices.
-nano-lazar as a part of the eNanoMapper analysis and modelling infrastructure is built upon the OpenTox web services framework following
-the principles of the Representational State Transfer (REST) design model. \ No newline at end of file
+`nano-lazar`\cite{helma_2017} as a part of the eNanoMapper analysis and modelling infrastructure is built upon the OpenTox
+web services framework following the principles of the Representational State Transfer (REST) design model. \ No newline at end of file
diff --git a/markdown_blocks/rest_screenshot.md b/markdown_blocks/rest_screenshot.md
index 4d6140c..642a125 100644
--- a/markdown_blocks/rest_screenshot.md
+++ b/markdown_blocks/rest_screenshot.md
@@ -1 +1 @@
-![Swagger UI for the nano-lazar REST API](./images/rest_swagger_2.png "Swagger UI for the nano-lazar REST API"){width=1540px} \ No newline at end of file
+![Swagger UI for the `nano-lazar` REST API](./images/rest_swagger_2.png "Swagger UI for the nano-lazar REST API"){width=1540px} \ No newline at end of file
diff --git a/markdown_blocks/rest_swagger_ui.md b/markdown_blocks/rest_swagger_ui.md
index 2e8e5eb..1047bc7 100644
--- a/markdown_blocks/rest_swagger_ui.md
+++ b/markdown_blocks/rest_swagger_ui.md
@@ -1 +1 @@
-Swagger UI is used as an interactive documentation and visualization platform for the lazar-rest API. \ No newline at end of file
+Swagger UI is used as an interactive documentation and visualization platform for the `lazar-rest` API. \ No newline at end of file
diff --git a/markdown_blocks/services_infrastructure.md b/markdown_blocks/services_infrastructure.md
index ddcc090..aff37a3 100644
--- a/markdown_blocks/services_infrastructure.md
+++ b/markdown_blocks/services_infrastructure.md
@@ -4,7 +4,9 @@ eNanoMapper infrastructure services implemented and maintained by IST.
<https://bugzilla.enanomapper.net/>
* Mailman mailing list for partner, developers and associate-partners
- <http://lists.enanomapper.net/>
+ <http://lists.enanomapper.net/cgi-bin/mailman/listinfo/partner>
+ <http://lists.enanomapper.net/cgi-bin/mailman/listinfo/developers>
+ <http://lists.enanomapper.net/cgi-bin/mailman/listinfo/associate-partner>
* Registration form and user management
<https://purl.enanomapper.net/register/>
@@ -16,7 +18,7 @@ eNanoMapper infrastructure services implemented and maintained by IST.
(e.g. <https://purl.enanomapper.net/php/ENM_0000018>)
* LDAP user database server and replication server
- <ldap.opentox.org>
+ <http://ldap.opentox.org>
* Blog entries with technical details about eNanoMapper implementations
<http://opentox.github.io/archive>
diff --git a/markdown_blocks/services_lazar-rest.md b/markdown_blocks/services_lazar-rest.md
index 9a1b028..866e6b6 100644
--- a/markdown_blocks/services_lazar-rest.md
+++ b/markdown_blocks/services_lazar-rest.md
@@ -1,6 +1,6 @@
-`lazar-rest` provides an eNanoMapper compatible REST API for the `nano-lazar` read-across framework
+`lazar-rest` provides an eNanoMapper compatible REST API for the `nano-lazar` read-across framework.
-* `lazar-rest` Swagger UI documentation for API visualization and interaction. \cite{rautenberg_micha_2016_187328}
+* `lazar-rest` Swagger UI documentation for API visualization and interaction \cite{rautenberg_micha_2016_187328}
<https://enm.in-silico.ch>
* `lazar-rest` Swagger API definition file
diff --git a/markdown_blocks/services_lazar.md b/markdown_blocks/services_lazar.md
index e63888d..ab271a9 100644
--- a/markdown_blocks/services_lazar.md
+++ b/markdown_blocks/services_lazar.md
@@ -1,4 +1,4 @@
-`lazar` is a framework for read-across predictions. Within eNanoMapper `lazar` was extended with interfaces for the eNanoMapper infrastructure and capabilities to predict nanomaterial toxicities.
+`lazar`\cite{Maunz2013} is a framework for read-across predictions. Within eNanoMapper `lazar` was extended with interfaces for the eNanoMapper infrastructure and capabilities to predict nanomaterial toxicities.
* `lazar` source code \cite{helma_christoph_2016_215483}
<https://github.com/opentox/lazar>
diff --git a/markdown_blocks/services_links.md b/markdown_blocks/services_links.md
index 45b72c0..0d9b255 100644
--- a/markdown_blocks/services_links.md
+++ b/markdown_blocks/services_links.md
@@ -1,13 +1,13 @@
-* Lazar (source code)
+* `lazar` (source code)
<https://github.com/opentox/lazar>
-* Nano-lazar GUI (graphical user interface)
+* `nano-lazar` GUI (graphical user interface)
<https://github.com/eNanoMapper/nano-lazar>
-* Nano-lazar Restful API services
+* `nano-lazar` Restful API services
<https://github.com/opentox/lazar-rest>
-* Nano-lazar paper manuscript (source code repository)
+* `nano-lazar` paper manuscript (source code repository)
<https://github.com/enanomapper/nano-lazar-paper>
* Docker image
diff --git a/markdown_blocks/services_nano-lazar-paper.md b/markdown_blocks/services_nano-lazar-paper.md
index c61390f..ff7db57 100644
--- a/markdown_blocks/services_nano-lazar-paper.md
+++ b/markdown_blocks/services_nano-lazar-paper.md
@@ -1,6 +1,7 @@
-Detailed description of `nano-lazar` methods and validation results. Results can be reproduced by external researchers with the accompanying docker image.
+Detailed description of `nano-lazar` methods and validation results \cite{helma_2017}.
+Results can be reproduced by external researchers with the accompanying docker image.
-* Source code for nano-lazar publication (and oral presentations).
+* Source code for `nano-lazar` publication (and oral presentations).
<https://github.com/enanomapper/nano-lazar-paper>
* Manuscript submitted to Frontiers in Pharmacology
diff --git a/markdown_blocks/services_nano-lazar.md b/markdown_blocks/services_nano-lazar.md
index 3122fda..cf65a1b 100644
--- a/markdown_blocks/services_nano-lazar.md
+++ b/markdown_blocks/services_nano-lazar.md
@@ -1,6 +1,6 @@
-The `nano-lazar` GUI provides a public webinterface for `nano-lazar` models
+The `nano-lazar` GUI provides a public webinterface for `nano-lazar` models.
-* `nano-lazar` public webinterface \cite{gebele_denis_2017_250818}.
+* `nano-lazar` public webinterface \cite{gebele_denis_2017_250818}
<https://nano-lazar.in-silico.ch>
* `nano-lazar` source code
@@ -14,3 +14,6 @@ The `nano-lazar` GUI provides a public webinterface for `nano-lazar` models
* `nano-lazar` API documentation
<http://www.rubydoc.info/gems/nano-lazar>
+
+* `nano-lazar` dockerized service on Docker Hub
+ <https://hub.docker.com/u/insilicotox/nano-lazar> \ No newline at end of file
diff --git a/markdown_blocks/services_ontoviewer.md b/markdown_blocks/services_ontoviewer.md
index d50c2d7..80a5251 100644
--- a/markdown_blocks/services_ontoviewer.md
+++ b/markdown_blocks/services_ontoviewer.md
@@ -1,10 +1,10 @@
-The eNanoMapper ontology viewer visualizes SPARQL query results from eNM ontologies and data.
+The eNanoMapper `ontology viewer` visualizes SPARQL query results from eNM ontologies and data.
-* eNanoMapper ontology viewer \cite{gebele_denis_2017_259384}
+* eNanoMapper `ontology viewer` \cite{gebele_denis_2017_259384}
<https://query.enanomapper.net/>
-* eNanoMapper ontology viewer source code
+* eNanoMapper `ontology viewer` source code
<https://github.com/enanomapper/enm-ontoviewer>
-* eNanoMapper ontology viewer issue tracker
+* eNanoMapper `ontology viewer` issue tracker
<https://github.com/enanomapper/enm-ontoviewer/issues>
diff --git a/markdown_blocks/services_qsar-report.md b/markdown_blocks/services_qsar-report.md
index d29a97d..efc8ae2 100644
--- a/markdown_blocks/services_qsar-report.md
+++ b/markdown_blocks/services_qsar-report.md
@@ -1,6 +1,6 @@
QMRF and QPRF reporting features for `nano-lazar`. This library is accessible from the `nano-lazar` GUI and the `lazar-rest` webservices.
-* `qsar-report` source code \cite{rautenberg_micha_2016_179038}
+* `qsar-report` source code\cite{rautenberg_micha_2016_179038}
<https://github.com/opentox/qsar-report>
* `qsar-report` Ruby gem library
diff --git a/markdown_blocks/services_testing.md b/markdown_blocks/services_testing.md
new file mode 100644
index 0000000..6aedde2
--- /dev/null
+++ b/markdown_blocks/services_testing.md
@@ -0,0 +1,3 @@
+IST uses the Ruby MiniTest framework for Test Driven Development (TDD).
+Automated nightly tests keep track of code changes and ensure the
+interoperability within IST components and with external services. \ No newline at end of file
diff --git a/nmsa-ist-rest.pdf b/nmsa-ist-rest.pdf
new file mode 100644
index 0000000..e224de2
--- /dev/null
+++ b/nmsa-ist-rest.pdf
Binary files differ
diff --git a/nmsa-ist-rest.tex b/nmsa-ist-rest.tex
index 4f89784..4f840f1 100644
--- a/nmsa-ist-rest.tex
+++ b/nmsa-ist-rest.tex
@@ -10,7 +10,7 @@
\title{In silico toxicology eNanoMapper REST services}
\author{M. Rautenberg, C. Helma, D. Gebele}
\institute{\emph{in silico} toxicology gmbh, Basel, Switzerland}
-\footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch} \\ \emph{in silico toxicology gmbh} - Rastatterstrasse 41 - CH-4057 Basel, Switzerland }
+\footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch} \\ \emph{in silico} toxicology gmbh - Rastatterstrasse 41 - CH-4057 Basel, Switzerland }
\begin{document}
@@ -22,7 +22,7 @@
\input{./markdown_blocks/rest_summary}
\end{block}
- \begin{block}{lazar}
+ \begin{block}{\tt{lazar}}
\justifying
\input{./markdown_blocks/rest_lazar_description}
\end{block}
@@ -32,12 +32,12 @@
\input{./markdown_blocks/rest_rest}
\end{block}
- \begin{block}{lazar-rest services}
+ \begin{block}{\tt{lazar-rest} services}
\justifying
\input{./markdown_blocks/rest_lazar-rest}
\end{block}
- \begin{block}{lazar-rest Swagger interface}
+ \begin{block}{\tt{lazar-rest} Swagger interface}
\vskip.2ex
\input{./markdown_blocks/rest_swagger_ui}
\vskip.2ex
diff --git a/nmsa-ist-services.pdf b/nmsa-ist-services.pdf
new file mode 100644
index 0000000..38305a2
--- /dev/null
+++ b/nmsa-ist-services.pdf
Binary files differ
diff --git a/nmsa-ist-services.tex b/nmsa-ist-services.tex
index 542faba..de52529 100644
--- a/nmsa-ist-services.tex
+++ b/nmsa-ist-services.tex
@@ -1,6 +1,6 @@
\documentclass[final]{beamer}
\usetheme{IST}
-\usepackage[orientation=portrait,size=a0,scale=1.3,debug]{beamerposter} % poster size
+\usepackage[orientation=portrait,size=a0,scale=1.35,debug]{beamerposter} % poster size
\usepackage[absolute,overlay]{textpos}
\usepackage[utf8]{inputenc}
@@ -21,51 +21,50 @@
\input{./markdown_blocks/services_summary}
\end{block}
- \begin{block}{lazar}
+ \begin{block}{\tt{lazar}}
\input{./markdown_blocks/services_lazar}
\end{block}
- \begin{block}{nano-lazar}
+ \begin{block}{\tt{nano-lazar}}
\input{./markdown_blocks/services_nano-lazar}
\end{block}
- \begin{block}{nano-lazar-paper}
+ \begin{block}{\tt{nano-lazar}-paper}
\input{./markdown_blocks/services_nano-lazar-paper}
\end{block}
- \begin{block}{lazar-rest}
+ \begin{block}{\tt{lazar-rest}}
\input{./markdown_blocks/services_lazar-rest}
\end{block}
- \begin{block}{eNM ontoviewer}
- \input{./markdown_blocks/services_ontoviewer}
- \end{block}
-
\begin{block}{SPARQL endpoint to eNM ontology and data}
\input{./markdown_blocks/services_sparql}
\end{block}
-
\end{textblock}
\begin{textblock}{40.5}(42.6,8.6)
- \begin{block}{Docker}
- \input{./markdown_blocks/services_docker}
- \end{block}
-
- \begin{block}{Authorization \& Authentication}
- \input{./markdown_blocks/services_aa}
+ \begin{block}{eNM ontoviewer}
+ \input{./markdown_blocks/services_ontoviewer}
\end{block}
\begin{block}{QSAR-reporting}
\input{./markdown_blocks/services_qsar-report}
\end{block}
+ \begin{block}{Authorization \& Authentication}
+ \input{./markdown_blocks/services_aa}
+ \end{block}
+
\begin{block}{eNanoMapper infrastructure}
\input{./markdown_blocks/services_infrastructure}
\end{block}
+ \begin{block}{Testing framework}
+ \input{./markdown_blocks/services_testing}
+ \end{block}
+
\begin{block}{References}
\small\bibliography{references}
\end{block}
diff --git a/references.bib b/references.bib
index e5decae..9b5cee8 100644
--- a/references.bib
+++ b/references.bib
@@ -1,3 +1,11 @@
+@article{helma_2017,
+ author = {Helma, Christoph and Rautenberg, Micha and Gebele, Denis},
+ title = {nano-lazar: {R}ead across predictions for nanoparticle toxicities with calculated and measured properties address.},
+ journal={Frontiers in Pharmacology},
+ note = {Submitted to Frontiers in Pharmacology 2017 Jan, Predictive Toxicology section},
+ year={2017},
+ publisher={Frontiers Media SA}
+}
@misc{gebele_denis_2017_259384,
author = {Gebele, Denis and
Rautenberg, Micha and
@@ -44,7 +52,7 @@
author = {Rautenberg, Micha and
Helma, Christoph and
Gebele, Denis},
- title = {qsar-report ruby gem library},
+ title = {qsar-report {R}uby gem library},
month = sep,
year = 2016,
doi = {10.5281/zenodo.179038},