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authorgebele <gebele@in-silico.ch>2017-01-26 11:58:39 +0100
committergebele <gebele@in-silico.ch>2017-01-26 11:58:39 +0100
commitc76a0f9a26a52a43ae404333460acbca847fa3c1 (patch)
tree5d084588dc90006f0a10e23d1dae799788b9ba77 /markdown_blocks/integration_text.md
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Merge branch 'master' of https://github.com/opentox/lazar-poster
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+**`lazar`** \cite{helma_2017}\cite{helma_christoph_2016_215483}
+
+ - Mirrors eNanoMapper data for read-across models
+ - Creates read-across predictions for the `nano-lazar` webinterface
+ - Responds to requests from the `lazar-rest` interface (e.g. nanoparticle predictions, model creation and validation, descriptor calculation)
+
+**RDF store**
+
+ - Mirrors eNanoMapper data and ontologies
+ - Responds to SPARQL queries from the ontology viewer and the SPARQL interface
+
+**`nano-lazar` GUI** \cite{gebele_denis_2017_250818}
+
+ - Obtains nanoparticle toxicity predictions from the `lazar` library
+ - Uses ontologies (eNanoMapper, BioPortal, UniProt) to explain domain specific terms in the user interface
+ - Uses ontologies and eNanoMapper data as supporting information for read-across predictions
+
+**eNM `ontology viewer`**
+
+ - Sends SPARQL queries to the RDF store
+ - Visualises RDF response from the RDF store
+
+**`nano-lazar` REST interface** \cite{rautenberg_micha_2016_187328}
+
+ - Interacts with the `lazar` library (e.g. for toxicity predictions, model creation and validation, descriptor calculation)
+ - Will be maintained and developed in the FP7 OpenRiskNet project
+
+**eNM SPARQL interface**
+
+ - Sends SPARQL queries to the RDF store
+ - Receives SPARQL query results in different formats
+
+