1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
|
\documentclass[final]{beamer}
\usetheme{IST}
\usepackage[orientation=portrait,size=a0,scale=1.4,debug]{beamerposter} % poster size
\usepackage[absolute,overlay]{textpos}
\usepackage[utf8]{inputenc}
\usepackage{graphicx,caption,subcaption,float,lipsum}
\captionsetup[subfigure]{labelformat=empty}
\graphicspath{ {./images/} }
\setlength{\TPHorizModule}{1cm}
\setlength{\TPVertModule}{1cm}
\title{eNM-Ontoviewer: Interactive visualisation of SPARQL queries for eNanoMapper ontologies and data}
\author{D. Gebele, M. Rautenberg, C. Helma}
\institute{\emph{in silico} toxicology gmbh, Basel, Switzerland}
\footer{Contact: \texttt{support@in-silico.ch}. Information: \texttt{www.in-silico.ch}}
\begin{document}
\begin{frame}{}
\begin{textblock}{81.5}(1,12)
\justifying
\input{./markdown_blocks/ontoviewer_summary}
\end{textblock}
\begin{textblock}{30}(1,20)
\includegraphics[scale=0.35,trim={20cm 0 0 0},clip]{onto-viewer-dendogram-1.png}
\end{textblock}
\begin{textblock}{40}(3,96)
\small Figure 1: Dendogram
\end{textblock}
\begin{textblock}{63}(20,18)
\justifying
\begin{block}{Use case 1: Investigate the eNanoMapper ontology}
Assuming that we are interested in \emph{toxicological endpoints} we execute the template SPARQL query to receive results either as a static \emph{Dendogram} graph \emph{(Figure 1)} or as an interactive \emph{Sunburst} graph \emph{(Figure 2)}. To get all information about a subject we can use the SPARQL interface \emph{(Figure 4)} and write another query. We are always able to refine our query or investigate directly any kind of URIs from the result \emph{(Figure 5)}.
\begin{figure}
\hspace{-0.1\textwidth}
\begin{subfigure}[c]{0.35\textwidth}
\includegraphics[scale=0.75,keepaspectratio]{onto-use-case-1a.png}
\caption{Figure 2: Sunburst. Result for \emph{toxicological endpoint} search.}
\end{subfigure}
\hspace{0.15\textwidth}
\begin{subfigure}[c]{0.35\textwidth}
\includegraphics[scale=0.65,keepaspectratio]{onto-use-case-1b.png}
\caption{Figure 3: Sunburst. Interactive zoom on \emph{dermal toxicity} endpoint.}
\end{subfigure}
\end{figure}
\vspace{0.02\textwidth}
\begin{figure}
\hspace{-0.1\textwidth}
\begin{subfigure}[c]{0.35\textwidth}
\includegraphics[scale=0.5,keepaspectratio]{onto-use-case-1c.png}
\caption{Figure 4: SPARQL interface. Select \emph{skin sensitization} subclass endpoint from \emph{Figure 3} for a detail query.}
\end{subfigure}
\hspace{0.12\textwidth}
\begin{subfigure}[c]{0.35\textwidth}
\includegraphics[scale=0.6,keepaspectratio]{onto-use-case-1d.png}
\caption{Figure 5: Following a link from the query result in \emph{Figure 4} we reach the eNanoMapper ontology on BioPortal.}
\end{subfigure}
\end{figure}
\end{block}
\end{textblock}
\begin{textblock}{63}(20,70)
\justifying
\begin{block}{Use case 2: Investigate eNanoMapper data}
Assuming that we want to investigate eNanoMapper nano material data we can simply choose one of the given SPARQL examples \emph{(Figure 6)} as a starting point. In this case we are interested in \emph{surface charge} and search for the zeta potential and its values. We receive a table with values and resource identifiers which point us directly to the resource page of the eNanoMapper database service \emph{(Figure 7)}.
\begin{figure}
\vspace{0.01\textwidth}
\hspace{-0.15\textwidth}
\begin{subfigure}[c]{0.35\textwidth}
\includegraphics[scale=0.75,keepaspectratio]{onto-use-case-2a.png}
\caption{Figure 6: SPARQL interface. Select one of the \emph{physio-chemical characteristics} examples.}
\end{subfigure}
\hspace{0.12\textwidth}
\begin{subfigure}[c]{0.35\textwidth}
\vspace{0.1\textwidth}
\includegraphics[scale=0.75,keepaspectratio]{onto-use-case-2b.png}
\caption{Figure 7: Following a link from the query result in \emph{Figure 6} we reach the eNanoMapper database service.}
\end{subfigure}
\end{figure}
\end{block}
\end{textblock}
\begin{textblock}{39.5}(1,100)
\begin{exampleblock}{Links}
\input{./markdown_blocks/ontoviewer_links}
\end{exampleblock}
\end{textblock}
\begin{textblock}{40.5}(42.5,100)
\begin{block}{References}
\small\bibliography{references}
\end{block}
\end{textblock}
\end{frame}
\end{document}
|
