1 files changed, 55 insertions, 0 deletions
diff --git a/lazar_validation_reports.rb b/lazar_validation_reports.rb
new file mode 100644
index 0000000..5621577
--- /dev/null
+++ b/lazar_validation_reports.rb
@@ -0,0 +1,55 @@
+ENV["LAZAR_ENV"] = "production"
+require_relative '../lazar/lib/lazar'
+#require 'lazar'
+require 'json'
+include OpenTox
+
+models = Model::Validation.all
+size = models.size
+puts "#{size} reports to store."
+
+# create dir if not exists
+path = "#{ENV['HOME']}/lazar-validation-reports"
+dir = FileUtils.mkdir_p path
+
+models.each_with_index do |model, idx|
+
+  @json = {}
+  
+  # define file name
+  type = model.regression? ? "regression" : "classification"
+  #name = model.model.name.gsub!(/[^0-9A-Za-z.\-]/, '_')
+  date = model.created_at.to_s.split.first
+  name = (model.endpoint + "_" + model.species).gsub!(/[^0-9A-Za-z.\-]/, '_')
+  branch = model.model.version["branch"]
+  commit = model.model.version["commit"]
+  filename = [date,type,branch,commit,name].join("_")
+
+  # collect object data
+  @json["endpoint"] = model.endpoint
+  @json["species"] = model.species
+  @json["source"] = model.source
+  @json["training_dataset"] = model.training_dataset.source
+  @json["training_compounds"] = model.training_dataset.data_entries.size
+  @json["algorithms"] = model.algorithms
+  @json["name"] = model.model.name
+  @json["created_at"] = model.created_at
+  @json["unit"] = model.unit
+  @json["version"] = model.model.version
+  @json["crossvalidations"] = {} 
+  model.crossvalidations.each_with_index do |cv,idx|
+    @json["crossvalidations"][idx.to_s] = {"folds": cv.folds, "instances": cv.nr_instances, "unpredicted": cv.nr_unpredicted, "statistics": cv.statistics}
+  end
+
+  # write report to file
+  File.open("#{path}/#{filename}.json", "w") do |f|
+    f.write(JSON.pretty_generate(JSON.parse(@json.to_json)))
+  end
+
+  puts "#{size - (idx+1)} left to store."
+
+end
+
+# store database dump
+puts "Storing database dump."
+`mongodump -h 127.0.0.1 -o #{path}/#{Time.now.to_s.split.first}-dump-#{ENV["LAZAR_ENV"]} -d #{ENV["LAZAR_ENV"]}`