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Diffstat (limited to 'scripts/modena2lazar.rb')
-rw-r--r-- | scripts/modena2lazar.rb | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/scripts/modena2lazar.rb b/scripts/modena2lazar.rb new file mode 100644 index 0000000..801106b --- /dev/null +++ b/scripts/modena2lazar.rb @@ -0,0 +1,31 @@ +require_relative '../../lazar/lib/lazar' +include OpenTox + +descriptors = ["Material","Coating","Primary size 1st Dimension [nm]","Primary size 2nd Dimension [nm]","Aspect ratio","Surface area [m2/g]","Zeta potential [mV]","Size in situ [nm]"] + +conditions = ["Assay","Treatment time","Cell type","Serum concentration","Dispersion protocol"] +endpoints = ["EC25 (ug/ml)","EC50 (ug/ml)","slope EC50 (ug/ml)","EC25 (mm2/ml)","EC50 (mm2/ml)","slope EC50 (surface area)","EC25 (10E12 particles/ml)","EC50 (10E12 particles/ml)","slope EC50 (number)"] + +descriptor_csv = CSV.open("../regression/MODENA-descriptors.csv", "wb") +#endpoint_csvs +#endpoins.each do |e| + +#descriptor_csv << ["ID"]+descriptors +input = CSV.read("../src/MODENA-EC50_EC25.csv") +header = input.shift +descriptor_indices = descriptors.collect{|d| header.index d} +condition_indices = conditions.collect{|c| header.index c} +condition_parameters = [] +condition_counts = {} +input.each do |line| + id = line[0]+"_"+line[1].gsub(" ","_") + #descriptor_csv << [id]+descriptor_indices.collect{|i| line[i]} + conds = condition_indices.collect{|i| line[i]} + condition_parameters << conds + condition_counts[conds] ||= 0 + condition_counts[conds] += 1 +end +#descriptor_csv.close +p condition_parameters.size +p condition_parameters.uniq.size +p condition_counts.sort{|a,b| b.last <=> a.last} |