new structure, adjusted yard doc, new routes for validation

1 files changed, 28 insertions, 0 deletions

diff --git a/lib/dataset.rb b/lib/dataset.rb
new file mode 100644
index 0000000..227ff20
--- /dev/null
+++ b/lib/dataset.rb
@@ -0,0 +1,28 @@
+include OpenTox
+
+# route to swagger API file
+get "/dataset/?" do
+  datasets = OpenTox::Dataset.all
+  case @accept
+  when "text/uri-list"
+    uri_list = datasets.collect{|dataset| uri("/dataset/#{dataset.id}")}
+    return uri_list.join("\n") + "\n"
+  when "application/json"
+    datasets = JSON.parse datasets.to_json
+    datasets.each_index do |idx|
+      datasets[idx][:URI] = uri("/dataset/#{datasets[idx]["_id"]["$oid"]}")
+      #models[idx][:crossvalidation_uri] = uri("/crossvalidation/#{models[idx]["crossvalidation_id"]["$oid"]}") if models[idx]["crossvalidation_id"]
+    end
+    return models.to_json
+  else
+    bad_request_error "Mime type #{@accept} is not supported."
+  end
+
+end
+
+
+# d = OpenTox::Dataset.find :id => "57c446d13c58a77ec9baaecf"
+# d.data_entries
+# d.name d.source
+# OpenTox::Substance.find :id => "57c446d23c58a77ec9baaed8"
+# OpenTox::Feature.find :id => "57c446d53c58a77ec9bab236"
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