diff options
| -rw-r--r-- | Gemfile | 6 | ||||
| -rw-r--r-- | VERSION | 1 | ||||
| -rw-r--r-- | api/api.json | 148 | ||||
| -rw-r--r-- | application.rb | 20 | ||||
| -rw-r--r-- | config.ru | 5 | ||||
| -rw-r--r-- | lazar-rest.gemspec | 23 | ||||
| -rw-r--r-- | test/api.rb | 9 | ||||
| -rw-r--r-- | test/setup.rb | 6 | ||||
| -rw-r--r-- | unicorn.rb | 2 |
9 files changed, 220 insertions, 0 deletions
@@ -0,0 +1,6 @@ +source "https://rubygems.org" +gemspec +gem "sinatra" +gem "haml" +gem "sass" +gem "lazar", :path => "../lazar"
\ No newline at end of file @@ -0,0 +1 @@ +0.0.1beta
\ No newline at end of file diff --git a/api/api.json b/api/api.json new file mode 100644 index 0000000..6f9a037 --- /dev/null +++ b/api/api.json @@ -0,0 +1,148 @@ +{ + "swagger": "2.0", + "info": { + "description": "An REST Webservice for lazar\n", + "version": "0.0.1", + "title": "Lazar REST Service", + "contact": { + "name": "in silico toxicology", + "email": "service@in-silico.ch" + }, + "license": { + "name": "GNU GENERAL PUBLIC LICENSE", + "url": "https://github.com/opentox/lazar-rest/blob/master/LICENSE" + } + }, + "host": "mr-test.in-silico.ch", + "basePath": "/", + "schemes": [ + "https" + ], + "paths": { + "/model": { + "get": { + "tags": [ + "model" + ], + "description": "Get a list of all prediction models", + "parameters": [ + { + "name": "accept", + "in": "header", + "description": "requested Content-Type", + "required": true, + "type": "string", + "enum": [ + "text/uri-list", + "application/json" + ] + } + ], + "produces": [ + "text/uri-list", + "application/json" + ], + "responses": { + "200": { + "$ref": "#/responses/200" + }, + "400": { + "$ref": "#/responses/400" + }, + "401": { + "$ref": "#/responses/401" + }, + "404": { + "$ref": "#/responses/404" + }, + "500": { + "$ref": "#/responses/500" + } + } + } + }, + "/model/{id}": { + "post": { + "tags": [ + "model" + ], + "description": "Predict a compound", + "parameters": [ + { + "name": "Content-Type", + "in": "header", + "description": "body Content-Type", + "required": true, + "type": "string", + "enum": [ + "text/plain" + ] + }, + { + "name": "compound", + "in": "body", + "required": true, + "schema": { + "type": "string" + } + }, + { + "$ref": "#/parameters/modelid" + } + ], + "produces": [ + "application/json" + ], + "consumes": [ + "text/plain" + ], + "responses": { + "200": { + "$ref": "#/responses/200" + }, + "400": { + "$ref": "#/responses/400" + }, + "404": { + "$ref": "#/responses/404" + } + } + } + } + }, + "parameters": { + "modelid": { + "name": "id", + "in": "path", + "description": "model id", + "required": true, + "type": "string" + } + }, + "responses": { + "200": { + "description": "OK" + }, + "202": { + "description": "Accepted" + }, + "400": { + "description": "Bad Request" + }, + "401": { + "description": "Unauthorized" + }, + "404": { + "description": "Resource Not Found" + }, + "500": { + "description": "Server Error" + } + }, + "tags": [ + { + "name": "model", + "description": "Lazar Model Service" + } + ] +}
\ No newline at end of file diff --git a/application.rb b/application.rb new file mode 100644 index 0000000..37de1d0 --- /dev/null +++ b/application.rb @@ -0,0 +1,20 @@ +include OpenTox + +# add CORS support for swagger +use Rack::Cors do |config| + config.allow do |allow| + allow.origins '*' + allow.resource "/#{SERVICE}/*", + :methods => [:head, :get, :post, :put, :delete, :options], + :headers => :any, + :max_age => 0 + end +end + +# route to swagger API file +get "/api/api.json" do + response['Content-Type'] = "application/json" + api_file = File.join("api", "api.json") + bad_request_error "API Documentation in Swagger JSON is not implemented.", uri("/#{SERVICE}/api") unless File.exists?(api_file) + File.read(api_file) +end diff --git a/config.ru b/config.ru new file mode 100644 index 0000000..8a70672 --- /dev/null +++ b/config.ru @@ -0,0 +1,5 @@ +SERVICE = "lazar-rest" +require 'bundler' +Bundler.require +require File.expand_path './application.rb' +run Sinatra::Application
\ No newline at end of file diff --git a/lazar-rest.gemspec b/lazar-rest.gemspec new file mode 100644 index 0000000..525865f --- /dev/null +++ b/lazar-rest.gemspec @@ -0,0 +1,23 @@ +# -*- encoding: utf-8 -*- + +Gem::Specification.new do |s| + s.name = "lazar-rest" + s.version = File.read("./VERSION") + s.authors = ["Christoph Helma","Micha Rautenberg","Denis Gebele"] + s.email = ["helma@in-silico.ch","rautenberg@in-silico.ch","gebele@in-silico.ch"] + s.homepage = "http://github.com/opentox/lazar-rest" + s.summary = %q{lazar-rest} + s.description = %q{REST Interface for Lazar Toxicology Predictions} + s.license = 'GPL-3' + + s.rubyforge_project = "lazar-rest" + + s.files = `git ls-files`.split("\n") + s.required_ruby_version = '>= 1.9.2' + + s.add_runtime_dependency "lazar" + s.add_runtime_dependency "sinatra" + s.add_runtime_dependency "haml" + s.add_runtime_dependency "sass" + s.add_runtime_dependency "unicorn" +end
\ No newline at end of file diff --git a/test/api.rb b/test/api.rb new file mode 100644 index 0000000..d4987e2 --- /dev/null +++ b/test/api.rb @@ -0,0 +1,9 @@ +require_relative "setup.rb" + +class ApiTest < MiniTest::Test + + def test_0_api_get + + end + +end
\ No newline at end of file diff --git a/test/setup.rb b/test/setup.rb new file mode 100644 index 0000000..af95126 --- /dev/null +++ b/test/setup.rb @@ -0,0 +1,6 @@ +require 'minitest/autorun' + +require_relative '../../lazar/lib/lazar.rb' +#include OpenTox +TEST_DIR ||= File.expand_path(File.dirname(__FILE__)) +DATA_DIR ||= File.join(TEST_DIR,"data") diff --git a/unicorn.rb b/unicorn.rb new file mode 100644 index 0000000..f90ca3f --- /dev/null +++ b/unicorn.rb @@ -0,0 +1,2 @@ +worker_processes 4 +timeout 6000
\ No newline at end of file |