diff options
| author | David Vorgrimmler <vorgrimmlerdavid@gmx.de> | 2010-02-08 15:11:45 +0100 |
|---|---|---|
| committer | David Vorgrimmler <vorgrimmlerdavid@gmx.de> | 2010-02-08 15:11:45 +0100 |
| commit | 6ab4b3f02b11e2d3d605d547e841b5469170832f (patch) | |
| tree | e3ef334938595585459917a2eef413f866689127 /bin | |
| parent | c1601b1f917651161337054ce01b692ff37329bd (diff) | |
Updating ubuntu script.
Diffstat (limited to 'bin')
| -rwxr-xr-x | bin/opentox-install-ubuntu.sh | 13 |
1 files changed, 12 insertions, 1 deletions
diff --git a/bin/opentox-install-ubuntu.sh b/bin/opentox-install-ubuntu.sh index f512b71..b27f9f9 100755 --- a/bin/opentox-install-ubuntu.sh +++ b/bin/opentox-install-ubuntu.sh @@ -74,6 +74,7 @@ then else echo "Rubygems version $GEMVERSION installation failed." FAILED=1 + exit $FAILED fi else echo "rubygems-$GEMVERSION folder already exist. " @@ -83,7 +84,7 @@ echo "Installing packages: zlib1g-dev tcl curl perl ssh tcl tk8.5 libopenssl-rub sudo apt-get install zlib1g-dev tcl curl perl libopenssl-ruby libgsl0-dev r-base | tee -a $INSTALLLOG sudo apt-get install ssh tcl tk8.5 | tee -a $INSTALLLOG sudo apt-get install swig | tee -a $INSTALLLOG -apt-get install postgresql-server-dev-8.2 | tee -a $INSTALLLOG +sudo apt-get install postgresql-server-dev-8.4 | tee -a $INSTALLLOG #echo "Installing gems jeweler sinatra emk-sinatra-url-for dm-core cehoffman-sinatra-respond_to rest-client rack-contrib thin cucumber datamapper data_objects do_sqlite3 rinruby" @@ -127,6 +128,7 @@ then else echo "Git version $GITVERSION installation failed." FAILED=1 + exit $FAILED fi else echo "git-$GITVERSION folder exists." @@ -158,6 +160,7 @@ then else echo "Raptor version $RAPTORVERSION installation failed." FAILED=1 + exit $FAILED fi else echo "raptor-$RAPTORVERSION folder exists." @@ -181,6 +184,7 @@ then else echo "Raptor version $RASQALVERSION2 or higher installation failed." FAILED=1 + exit $FAILED fi echo "Installing Redland redland" @@ -201,6 +205,7 @@ then else echo "Redland version $REDLANDVERSION installation failed." FAILED=1 + exit $FAILED fi @@ -223,6 +228,7 @@ then #else # echo "Redland Bindings version $REDBINDVERSION installation failed." # FAILED=1 + # exit $FAILED #fi else echo "Redland folder exists." @@ -249,6 +255,7 @@ then else echo "opentox-ruby-api-wrapper ($OTAPIVERSION) installation failed." FAILED=1 + exit $FAILED fi echo "Installing the webservices: compound, dataset, algorithm, model, task, feature" @@ -285,6 +292,8 @@ echo "Installing openbabel" cd ../opentox-compound sudo rake openbabel:install | tee -a $INSTALLLOG sudo ldconfig >>$INSTALLLOG 2>>$ERRLOG + +ln -s /usr/local/lib/libopenbabel.so.3 /usr/lib/libopenbabel.so.3 >> $INSTALLLOG 2>>$ERR #VERSION=` --version` #if [ "$VERSION" == "$RAPTORVERSION" ] #then @@ -294,6 +303,7 @@ sudo ldconfig >>$INSTALLLOG 2>>$ERRLOG #else # echo "Raptor version $RAPTORVERSION installation failed." # FAILED=1 +# exit $FAILED #fi @@ -328,6 +338,7 @@ then else echo "Fminer installation failed." FAILED=1 + exit $FAILED fi if [ $FAILED == 0 ] |