diff options
| author | Christoph Helma <helma@in-silico.ch> | 2019-06-20 22:01:50 +0200 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2019-06-20 22:01:50 +0200 |
| commit | 455da06aa6459da0d25b286ca6cb866ff64c4c34 (patch) | |
| tree | d0ed8fcf720a02742da781669251f379b8fd07f0 /ext | |
| parent | 1b44e0cd76f2ead93b8b3fa0f970c85ef32a4b14 (diff) | |
separate csv serialisations for batch predictions and training data, repeated measurements in mutagenicity dataset fixed, daphnia import fixed, CENTRAL_MONGO_IP removed
Diffstat (limited to 'ext')
| -rw-r--r-- | ext/lazar/extconf.rb | 2 | ||||
| -rw-r--r-- | ext/lazar/rinstall.R | 22 |
2 files changed, 13 insertions, 11 deletions
diff --git a/ext/lazar/extconf.rb b/ext/lazar/extconf.rb index 7cd85e0..aa031e5 100644 --- a/ext/lazar/extconf.rb +++ b/ext/lazar/extconf.rb @@ -10,7 +10,7 @@ programs.each do |program| abort "Please install #{program} on your system." unless find_executable program end -abort "Please install Rserve on your system. Execute 'install.packages('Rserve')' in a R console running as root ('sudo R')." unless `R CMD Rserve --version`.match(/^Rserve/) +abort "Please install the latest Rserve version on your system (the CRAN version is outdated). Execute 'install.packages('Rserve',,'http://www.rforge.net/')' in a R console running as root ('sudo R')." unless `R CMD Rserve --version`.match(/^Rserve v1.8/) # install R packages r_dir = File.join main_dir, "R" diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R index 98e612d..17c2e61 100644 --- a/ext/lazar/rinstall.R +++ b/ext/lazar/rinstall.R @@ -1,12 +1,14 @@ libdir = commandArgs(trailingOnly=TRUE)[1] repo = "https://stat.ethz.ch/CRAN/" -#install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE) -install.packages("stringi",lib=libdir,repos=repo,dependencies=TRUE); -install.packages("iterators",lib=libdir,repos=repo,dependencies=TRUE); -install.packages("foreach",lib=libdir,repos=repo,dependencies=TRUE); -install.packages("gridExtra",lib=libdir,repos=repo,dependencies=TRUE); -install.packages("ggplot2",lib=libdir,repos=repo,dependencies=TRUE); -install.packages("pls",lib=libdir,repos=repo,dependencies=TRUE); -install.packages("randomForest",lib=libdir,repos=repo,dependencies=TRUE); -install.packages("caret",lib=libdir,repos=repo,dependencies=TRUE); -install.packages("doMC",lib=libdir,repos=repo,dependencies=TRUE); +#install.packages("Rserve",lib=libdir,repos=) +# dependencies=TRUE installs unnecessary Suggests packages. The default, NA, means c("Depends", "Imports", "LinkingTo"). +install.packages("caret",lib=libdir,repos=repo); +install.packages("stringi",lib=libdir,repos=repo); +install.packages("iterators",lib=libdir,repos=repo); +install.packages("labeling",lib=libdir,repos=repo); +install.packages("foreach",lib=libdir,repos=repo); +install.packages("gridExtra",lib=libdir,repos=repo); +install.packages("ggplot2",lib=libdir,repos=repo); +install.packages("pls",lib=libdir,repos=repo); +install.packages("randomForest",lib=libdir,repos=repo); +install.packages("doMC",lib=libdir,repos=repo); |