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authorChristoph Helma <helma@in-silico.ch>2019-08-24 15:06:53 +0200
committerChristoph Helma <helma@in-silico.ch>2019-08-24 15:06:53 +0200
commit8e1e8b94539dbdd74bd4ac28295cbfd1b84036ab (patch)
tree28528e19dc6ed4cca7ed824e939dedd6c4acc94c /lib/caret.rb
parent1ee7de09c969e16fd11522d22179224e694b0161 (diff)
parent488ce9fe6d4b715680675861105b8c52a7535140 (diff)
Merge remote-tracking branch 'origin/development'
Diffstat (limited to 'lib/caret.rb')
-rw-r--r--lib/caret.rb11
1 files changed, 6 insertions, 5 deletions
diff --git a/lib/caret.rb b/lib/caret.rb
index 8bccf74..2e5f1bc 100644
--- a/lib/caret.rb
+++ b/lib/caret.rb
@@ -22,11 +22,11 @@ module OpenTox
end
if independent_variables.flatten.uniq == ["NA"] or independent_variables.flatten.uniq == []
prediction = Algorithm::Regression::weighted_average dependent_variables:dependent_variables, weights:weights
- prediction[:warnings] << "No variables for regression model. Using weighted average of similar substances."
+ prediction[:warnings] = ["No variables for regression model, using weighted average of similar substances (no prediction interval available)."]
elsif
dependent_variables.size < 3
prediction = Algorithm::Regression::weighted_average dependent_variables:dependent_variables, weights:weights
- prediction[:warnings] << "Insufficient number of neighbors (#{dependent_variables.size}) for regression model. Using weighted average of similar substances."
+ prediction[:warnings] = ["Insufficient number of neighbors (#{dependent_variables.size}) for regression model, using weighted average of similar substances (no prediction interval available)."]
else
dependent_variables.each_with_index do |v,i|
dependent_variables[i] = to_r(v)
@@ -51,7 +51,8 @@ module OpenTox
$logger.debug dependent_variables
$logger.debug independent_variables
prediction = Algorithm::Regression::weighted_average dependent_variables:dependent_variables, weights:weights
- prediction[:warnings] << "R caret model creation error. Using weighted average of similar substances."
+ prediction[:warnings] ||= []
+ prediction[:warnings] << "R caret model creation error, using weighted average of similar substances (no prediction interval available)."
return prediction
end
begin
@@ -72,12 +73,12 @@ module OpenTox
$logger.debug "R caret prediction error for:"
$logger.debug self.inspect
prediction = Algorithm::Regression::weighted_average dependent_variables:dependent_variables, weights:weights
- prediction[:warnings] << "R caret prediction error. Using weighted average of similar substances"
+ prediction[:warnings] << "R caret prediction error, using weighted average of similar substances (no prediction interval available)."
return prediction
end
if prediction.nil? or prediction[:value].nil?
prediction = Algorithm::Regression::weighted_average dependent_variables:dependent_variables, weights:weights
- prediction[:warnings] << "Empty R caret prediction. Using weighted average of similar substances."
+ prediction[:warnings] << "Empty R caret prediction, using weighted average of similar substances (no prediction interval available)."
end
end
prediction