diff options
| author | Christoph Helma <helma@in-silico.ch> | 2013-07-02 19:23:01 +0200 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2013-07-02 19:23:01 +0200 |
| commit | 6c35e3f8369ba96cb251eac487424bd949fdcf6c (patch) | |
| tree | efb13808cfd022793800460a729bf0b583284d21 /lib/opentox-client.rb | |
| parent | 308ed58dc56815317f89654a0cc4ab7fb70a9f31 (diff) | |
Algorithms and Models are modules instead of classes.
Diffstat (limited to 'lib/opentox-client.rb')
| -rw-r--r-- | lib/opentox-client.rb | 12 |
1 files changed, 10 insertions, 2 deletions
diff --git a/lib/opentox-client.rb b/lib/opentox-client.rb index 02724c2..f25f05a 100644 --- a/lib/opentox-client.rb +++ b/lib/opentox-client.rb @@ -10,6 +10,13 @@ require 'json' require 'logger' require "securerandom" +default_config = File.join(ENV["HOME"],".opentox","config","default.rb") +client_config = File.join(ENV["HOME"],".opentox","config","opentox-client.rb") + +puts "Could not find configuration files #{default_config} or #{client_config}" unless File.exist? default_config or File.exist? client_config +require default_config if File.exist? default_config +require client_config if File.exist? client_config + # define constants and global variables RDF::OT = RDF::Vocabulary.new 'http://www.opentox.org/api/1.2#' RDF::OT1 = RDF::Vocabulary.new 'http://www.opentox.org/api/1.1#' @@ -19,7 +26,8 @@ RDF::TB = RDF::Vocabulary.new "http://onto.toxbank.net/api/" RDF::ISA = RDF::Vocabulary.new "http://onto.toxbank.net/isa/" RDF::OWL = RDF::Vocabulary.new "http://www.w3.org/2002/07/owl#" -CLASSES = ["Generic", "Compound", "Feature", "Dataset", "Algorithm", "Model", "Validation", "Task", "Investigation"] +#CLASSES = ["Generic", "Compound", "Feature", "Dataset", "Algorithm", "Model", "Validation", "Task", "Investigation"] +CLASSES = ["Compound", "Feature", "Dataset", "Validation", "Task", "Investigation"] RDF_FORMATS = [:rdfxml,:ntriples,:turtle] # Regular expressions for parsing classification data @@ -38,8 +46,8 @@ FALSE_REGEXP = /^(false|inactive|0|0.0|low tox|deactivating|non-carcinogen|non-m "compound.rb", "feature.rb", "dataset.rb", - "model.rb", "algorithm.rb", + "model.rb", "validation.rb" ].each{ |f| require_relative f } |