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author | Christoph Helma <helma@in-silico.ch> | 2016-03-15 17:40:40 +0100 |
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committer | Christoph Helma <helma@in-silico.ch> | 2016-03-15 17:40:40 +0100 |
commit | 7c3bd90c26dfeea2db3cf74a1cefc23d8dece7c0 (patch) | |
tree | 045d18b43e30ef3bf9a548230e45986b591535a6 /test/fminer-long.rb | |
parent | 0c5d2e678908a2d4aea43efbedbedc2c0439be30 (diff) |
validation tests pass
Diffstat (limited to 'test/fminer-long.rb')
-rw-r--r-- | test/fminer-long.rb | 41 |
1 files changed, 0 insertions, 41 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb deleted file mode 100644 index 845ed71..0000000 --- a/test/fminer-long.rb +++ /dev/null @@ -1,41 +0,0 @@ -require_relative "setup.rb" - -class FminerTest < MiniTest::Test - - def test_fminer_multicell - skip - #skip "multicell segfaults" - # TODO aborts, probably fminer - # or OpenBabel segfault - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"multi_cell_call.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) - p feature_dataset.training_parameters - assert_equal dataset.compound_ids, feature_dataset.compound_ids - dataset.delete - feature_dataset.delete - end - - def test_fminer_isscan - skip - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) - assert_equal feature_dataset.compounds.size, dataset.compounds.size - p feature_dataset.features.size - p feature_dataset.training_parameters - dataset.delete - feature_dataset.delete - end - - def test_fminer_kazius - skip - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") - # TODO reactivate default settings - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20) - assert_equal feature_dataset.compounds.size, dataset.compounds.size - feature_dataset = Dataset.find feature_dataset.id - assert feature_dataset.data_entries.size, dataset.compounds.size - dataset.delete - feature_dataset.delete - end - -end |