diff options
| -rw-r--r-- | lib/algorithm.rb | 3 | ||||
| -rw-r--r-- | lib/dataset.rb | 3 | ||||
| -rw-r--r-- | lib/feature.rb | 3 |
3 files changed, 6 insertions, 3 deletions
diff --git a/lib/algorithm.rb b/lib/algorithm.rb index af8dfaf..c8cb116 100644 --- a/lib/algorithm.rb +++ b/lib/algorithm.rb @@ -190,8 +190,7 @@ module OpenTox gram_matrix[i][i] = 1.0 end - LOGGER.debug gram_matrix.to_yaml - + #LOGGER.debug gram_matrix.to_yaml @r = RinRuby.new(false,false) # global R instance leads to Socket errors after a large number of requests @r.eval "library('kernlab')" # this requires R package "kernlab" to be installed LOGGER.debug "Setting R data ..." diff --git a/lib/dataset.rb b/lib/dataset.rb index 2c47502..c61d86f 100644 --- a/lib/dataset.rb +++ b/lib/dataset.rb @@ -165,7 +165,8 @@ module OpenTox # Detect feature type(s) in the dataset # @return [String] `classification", "regression", "mixed" or unknown` - def feature_type + def feature_type(subjectid=nil) + load_features(subjectid) feature_types = @features.collect{|f,metadata| metadata[OT.isA]}.uniq if feature_types.size > 1 "mixed" diff --git a/lib/feature.rb b/lib/feature.rb index c0729a7..e768f7b 100644 --- a/lib/feature.rb +++ b/lib/feature.rb @@ -2,6 +2,9 @@ module OpenTox class Feature include OpenTox + # Find a feature + # @param [String] uri Feature URI + # @return [OpenTox::Task] Feature object def self.find(uri, subjectid=nil) return nil unless uri feature = Feature.new uri |