1 files changed, 47 insertions, 0 deletions
diff --git a/test/data/enm/enm-import.rb b/test/data/enm/enm-import.rb
new file mode 100644
index 0000000..37bc22b
--- /dev/null
+++ b/test/data/enm/enm-import.rb
@@ -0,0 +1,47 @@
+require_relative '../lib/lazar.rb'
+include OpenTox
+$mongo.database.drop
+$gridfs = $mongo.database.fs
+
+#get list of bundle URIs
+bundles = JSON.parse(RestClientWrapper.get('https://data.enanomapper.net/bundle?media=application%2Fjson'))["dataset"]
+bundles.each do |bundle|
+  uri = bundle["URI"]
+  nanoparticles = JSON.parse(RestClientWrapper.get(bundle["dataset"]+"?media=application%2Fjson"))["dataEntry"]
+  features = JSON.parse(RestClientWrapper.get(bundle["property"]+"?media=application%2Fjson"))["feature"]
+  nanoparticles.each do |np|
+      nanoparticle = Nanoparticle.find_or_create_by(
+        :name => np["values"]["https://data.enanomapper.net/identifier/name"],
+        :source => np["compound"]["URI"],
+      )
+      nanoparticle.bundles << uri
+      nanoparticle.bundles.uniq!
+      np["composition"].each do |comp|
+        case comp["relation"]
+        when "HAS_CORE"
+          nanoparticle.core = comp["component"]["compound"]["URI"]
+        when "HAS_COATING"
+          nanoparticle.coating << comp["component"]["compound"]["URI"]
+        end
+      end if np["composition"]
+      np["values"].each do |u,v|
+        if u.match(/property/)
+          name, unit, source = nil
+          features.each do |uri,feat|
+            if u.match(/#{uri}/)
+              name = feat["title"]
+              unit = feat["units"]
+              source = uri
+            end
+          end
+          feature = Feature.find_or_create_by(
+            :name => name,
+            :unit => unit,
+            :source => source
+          )
+        end
+        v.each{|value| nanoparticle.parse_ambit_value feature, value} if v.is_a? Array
+      end
+      nanoparticle.save!
+  end
+end