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module OpenTox
module Model
=begin
# Run a model with parameters
# @param params [Hash] Parameters for OpenTox model
# @param wait [optional,OpenTox::Task] waiting_task (can be a OpenTox::Subtask as well), progress is updated accordingly
# @return [text/uri-list] Task or resource URI
def run params=nil, wait=true
uri = RestClientWrapper.post @uri, params, { :content_type => "text/uri-list", :subjectid => @subjectid}
wait_for_task uri if wait
end
=end
def feature_type # CH: subjectid is a object variable, no need to pass it as a parameter
unless @feature_type
bad_request_error "Cannot determine feature type, dependent variable missing in model #{@uri}" unless metadata[RDF::OT.dependentVariables]
@feature_type = OpenTox::Feature.new( metadata[RDF::OT.dependentVariables][0], @subjectid ).feature_type
end
@feature_type
end
def predicted_variable
load_predicted_variables unless defined? @predicted_variable
@predicted_variable
end
def predicted_confidence
load_predicted_variables unless defined? @predicted_confidence
@predicted_confidence
end
private
def load_predicted_variables
metadata[RDF::OT.predictedVariables].each do |f|
feat = OpenTox::Feature.new( f, @subjectid )
if feat.title =~ /confidence/
@predicted_confidence = f
else
@predicted_variable = f unless @predicted_variable
end
end
end
class Generic
include OpenTox
include OpenTox::Algorithm
include Model
end
class Lazar
include OpenTox
include OpenTox::Algorithm
include Model
def self.create params
Lazar.new(File.join($algorithm[:uri], "lazar")).run params
end
def predict params
run params
end
end
end
end
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