diff options
| author | Christoph Helma <helma@in-silico.ch> | 2015-10-08 10:29:18 +0200 |
|---|---|---|
| committer | Christoph Helma <helma@in-silico.ch> | 2015-10-08 10:29:18 +0200 |
| commit | 35e4ac2fbe4c76c599715d264f0fdb9ef7857173 (patch) | |
| tree | 2903b0f8893191dbb0d11c57b576a1ac04f90fb4 | |
| parent | 07d6766d49b6a07ddde69788c4bf614be899651f (diff) | |
updated models with repeated crossvalidation
| -rw-r--r-- | create_nestec_models.rb | 12 | ||||
| -rw-r--r-- | dump/opentox/compounds.bson | bin | 415165 -> 853904 bytes | |||
| -rw-r--r-- | dump/opentox/crossvalidations.bson | bin | 50250 -> 209432 bytes | |||
| -rw-r--r-- | dump/opentox/datasets.bson | bin | 337904 -> 916968 bytes | |||
| -rw-r--r-- | dump/opentox/features.bson | bin | 66204 -> 567 bytes | |||
| -rw-r--r-- | dump/opentox/fs.chunks.bson | bin | 990603 -> 1388508 bytes | |||
| -rw-r--r-- | dump/opentox/fs.files.bson | bin | 24835 -> 54600 bytes | |||
| -rw-r--r-- | dump/opentox/models.bson | bin | 14752 -> 44578 bytes | |||
| -rw-r--r-- | dump/opentox/open_tox_model_predictions.bson | bin | 669 -> 810 bytes | |||
| -rw-r--r-- | dump/opentox/repeatedcrossvalidations.bson | bin | 0 -> 444 bytes | |||
| -rw-r--r-- | dump/opentox/repeatedcrossvalidations.metadata.json | 1 | ||||
| -rw-r--r-- | dump/opentox/system.indexes.bson | bin | 882 -> 969 bytes | |||
| -rw-r--r-- | dump/opentox/validations.bson | bin | 55908 -> 226570 bytes |
13 files changed, 9 insertions, 4 deletions
diff --git a/create_nestec_models.rb b/create_nestec_models.rb index 145eab9..75bc237 100644 --- a/create_nestec_models.rb +++ b/create_nestec_models.rb @@ -1,10 +1,14 @@ require_relative '../lazar/lib/lazar' include OpenTox -$mongo.database.drop -$gridfs = $mongo.database.fs # recreate GridFS indexes +#$mongo.database.drop +#$gridfs = $mongo.database.fs # recreate GridFS indexes -["Rat_TD50.csv","Mouse_TD50.csv"].each do |file| +[ + #"Rat_TD50.csv", + #"Mouse_TD50.csv", + "LOAEL_mmol_corrected_smiles.csv" +].each do |file| file = File.join(File.dirname(__FILE__),"regression",file) Model::Prediction.from_csv_file file end -#`mongodump` +`mongodump -h 127.0.0.1 -d opentox` diff --git a/dump/opentox/compounds.bson b/dump/opentox/compounds.bson Binary files differindex 5113ac0..e4974fe 100644 --- a/dump/opentox/compounds.bson +++ b/dump/opentox/compounds.bson diff --git a/dump/opentox/crossvalidations.bson b/dump/opentox/crossvalidations.bson Binary files differindex 1f8fed9..8e98537 100644 --- a/dump/opentox/crossvalidations.bson +++ b/dump/opentox/crossvalidations.bson diff --git a/dump/opentox/datasets.bson b/dump/opentox/datasets.bson Binary files differindex 2b09726..8f788da 100644 --- a/dump/opentox/datasets.bson +++ b/dump/opentox/datasets.bson diff --git a/dump/opentox/features.bson b/dump/opentox/features.bson Binary files differindex e0db5b3..2e9a514 100644 --- a/dump/opentox/features.bson +++ b/dump/opentox/features.bson diff --git a/dump/opentox/fs.chunks.bson b/dump/opentox/fs.chunks.bson Binary files differindex 0179808..224d799 100644 --- a/dump/opentox/fs.chunks.bson +++ b/dump/opentox/fs.chunks.bson diff --git a/dump/opentox/fs.files.bson b/dump/opentox/fs.files.bson Binary files differindex 4933e2a..ac97ece 100644 --- a/dump/opentox/fs.files.bson +++ b/dump/opentox/fs.files.bson diff --git a/dump/opentox/models.bson b/dump/opentox/models.bson Binary files differindex 12134e9..9f386ec 100644 --- a/dump/opentox/models.bson +++ b/dump/opentox/models.bson diff --git a/dump/opentox/open_tox_model_predictions.bson b/dump/opentox/open_tox_model_predictions.bson Binary files differindex de3e150..a8e2d27 100644 --- a/dump/opentox/open_tox_model_predictions.bson +++ b/dump/opentox/open_tox_model_predictions.bson diff --git a/dump/opentox/repeatedcrossvalidations.bson b/dump/opentox/repeatedcrossvalidations.bson Binary files differnew file mode 100644 index 0000000..3999082 --- /dev/null +++ b/dump/opentox/repeatedcrossvalidations.bson diff --git a/dump/opentox/repeatedcrossvalidations.metadata.json b/dump/opentox/repeatedcrossvalidations.metadata.json new file mode 100644 index 0000000..8d360d1 --- /dev/null +++ b/dump/opentox/repeatedcrossvalidations.metadata.json @@ -0,0 +1 @@ +{"options":{},"indexes":[{"v":1,"key":{"_id":1},"name":"_id_","ns":"opentox.repeatedcrossvalidations"}]}
\ No newline at end of file diff --git a/dump/opentox/system.indexes.bson b/dump/opentox/system.indexes.bson Binary files differindex 4ce93c8..c6e3b16 100644 --- a/dump/opentox/system.indexes.bson +++ b/dump/opentox/system.indexes.bson diff --git a/dump/opentox/validations.bson b/dump/opentox/validations.bson Binary files differindex ea2fadf..2c7297c 100644 --- a/dump/opentox/validations.bson +++ b/dump/opentox/validations.bson |