diff options
Diffstat (limited to 'create_nestec_models.rb')
| -rw-r--r-- | create_nestec_models.rb | 23 |
1 files changed, 17 insertions, 6 deletions
diff --git a/create_nestec_models.rb b/create_nestec_models.rb index 4523250..d9fa299 100644 --- a/create_nestec_models.rb +++ b/create_nestec_models.rb @@ -1,20 +1,31 @@ require_relative '../lazar/lib/lazar' include OpenTox -$mongo.database.drop -$gridfs = $mongo.database.fs # recreate GridFS indexes +#$mongo.database.drop +#$gridfs = $mongo.database.fs # recreate GridFS indexes #=begin [ - "Rat_TD50.csv", - "Mouse_TD50.csv", + #"Rat_TD50.csv", + #"Mouse_TD50.csv", + #"LOAEL_mg_corrected_smiles_mmol.csv", + #"swissRat_chron_LOAEL_mmol.csv", "LOAEL-rat-combined.csv" #"LOAEL_mmol_corrected_smiles.csv", #"swissMouse_chron_LOAEL_mmol.csv", #"swissMultigen_LOAEL_mmol.csv", #"swissRat_chron_LOAEL_mmol.csv", + ].each do |file| file = File.join(File.dirname(__FILE__),"regression",file) - Model::Prediction.from_csv_file file + params = { + :prediction_algorithm => "OpenTox::Algorithm::Regression.local_pls_regression", + } + dataset = Dataset.from_csv_file file + model = Model::LazarRegression.create dataset, params + cv = RegressionCrossValidation.create model + puts cv.to_yaml + #Model::Prediction.from_csv_file file, params + #model = Model::LazarRegression.create dataset, params end #=end -`mongodump -h 127.0.0.1 -d production` +#`mongodump -h 127.0.0.1 -d production` #`mongorestore --host 127.0.0.1` |